Pairwise Alignments

Query, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2

Subject, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis S2

 Score =  157 bits (398), Expect = 3e-42
 Identities = 258/1198 (21%), Positives = 496/1198 (41%), Gaps = 255/1198 (21%)

Query: 3    IKNIKMENFRSHRNTSINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFRIENLMQ 62
            +  I M+NF+S +N+ +    G T+I+G NGSGKS+    + F L      + R     Q
Sbjct: 4    LSEIHMKNFKSFKNSKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63

Query: 63   QGAASFSVELEFEMMGNTYLVKRKRFQHKTDD-----KLYVNG--------------KLN 103
                       F  +   +  K ++    +D      K+ +NG              K N
Sbjct: 64   LITYHNGKRENFAEVTLIFDNKDRKMPVDSDKVGISRKVKINGDNNYYLIWNEEKEVKEN 123

Query: 104  AESAS---EINKKIE--EILEIDNSVFSNA---IYIKQGEIANLIQMTPRDRKEVIGKLL 155
             E  +   E  KK++  EIL++   +  +A     I QG++  +I  TP +R+++I ++ 
Sbjct: 124  GEIKTVKEEKRKKVKKSEILDVIGKISLSADGFNIILQGDLIKIIDTTPNERRKIIDEIS 183

Query: 156  GIEKYEKASEKMNIVKKSYEETLLKLEGELTQEPEILENLEKLKNEVSESEI---LKEEI 212
            G+ ++++  EK    KK  E+    +E    +  E+  NLEKLK E  ++E    L EE+
Sbjct: 184  GVAEFDEKGEK---AKKELEKAREFIEKIDIRINEVKNNLEKLKKEKEDAETHVKLTEEL 240

Query: 213  L-------------------KKYENLEKLKLEKNSEILQMEEKFAENNQLKENLKDIISE 253
                                K  E +E LK  K   + ++ E  A++N ++  L+++I+E
Sbjct: 241  KATKYILTSKKIEFLNGILEKTKEEIEALKEMKVCFLKEISEYDAKSNDIRNRLQNLINE 300

Query: 254  ---------------IKNINLEIQNFKNSLNLVAEESKNI-SENEENYKKYLELELKIKE 297
                           IK + + + N K SLN   ++ KN+ S++E+  +  +E   KI+ 
Sbjct: 301  LNEKGNEEIMELHKSIKEMEVTVDNDKKSLNGALDDLKNVNSQSEKKGQDLVETRQKIET 360

Query: 298  LNNKLIGHKSNYESYNKLKTIEESLLKELGVLKESLKDNKKNPDELKENLKENDEKI--- 354
            +  + +  ++     N LKT  E+L  E   LK  +++++   + LK+  ++  E+I   
Sbjct: 361  IRTETLQKEA---EINALKTEMENLETEKKKLKSKVEESETQTEILKQQERKLSERINES 417

Query: 355  -LILDKIKEKIKELE-FIEKQIYEIKIHKKTVETLFDSVKIYDDSIKTFEELKTKKNSYE 412
               L   K +   LE  I K+ + +  +K+T+ETL           K  EE++++    +
Sbjct: 418  QNELYNFKNEFNALENEINKKSFNLAKNKETIETL----------QKELEEIRSEHEDTK 467

Query: 413  NLLKEKFDL-------EKK----LQNETDEKTKLISELTDFEKIEEKINLENELKEKYED 461
            +L KE  D+       +KK    L+N+ + + +L     D+ K   KI    ++++   D
Sbjct: 468  SLYKELEDVAVELEYSKKKVVTLLENKKEYQDRLDKSHADYIKENAKIKAMKDMEDFSLD 527

Query: 462  ------LSEKIDKLNEIVLKKESKISEYKNSKAELEKTKDSCHVCQSKITEEKKQELLEK 515
                  L  K+  + +I        +EYK +       + +  V +      +  + L+K
Sbjct: 528  RAVKSVLEAKLPGVVDIAGNLGKTDAEYKTAIENAGGNRLNYIVVKRMDDGARAIQYLKK 587

Query: 516  YN----SEIQNEQLS-TESLKKQLEIILNKK-EKMKVKLNEIDSFKLKYGEL-------- 561
             N    + +  ++++  E+L    E ++ +  + ++ K    + F+  +G          
Sbjct: 588  NNLGRTTFLPLDRINGPEALYLDDEGVVGRAIDLVEFKPEHENLFRYVFGNTIIVENLDY 647

Query: 562  -----KEKKNYSLKVEESIIETTEKLNELTGKINEYSSLNDEISLIENKLKNLENDYKNC 616
                 K+ +   + +E  +IE +  +  + G+  + S +  ++ +  +KL+ L  D    
Sbjct: 648  AKTLSKDHRARFVTLEGEVIEPSGAM--IGGRSRKKSVI--KVDIDTSKLEKLAEDISEL 703

Query: 617  NYSSQFL------TKNDESEFLTKKLELS---KIIGD--------------------YDS 647
            + +           +N  + + T+K+EL    KII D                     +S
Sbjct: 704  DGTLSETKDEIERLQNKNATYSTRKMELESRLKIIKDLEHKKEGILTNNGVKIKELELES 763

Query: 648  SKIENEKKSLENLKDELKNTIYNLEREIN--------LKKELKNIQN-DISSKIGIV-EC 697
             K+E E   LE  K+EL+  I    ++I+        + +E+ + +N + S +I ++ E 
Sbjct: 764  RKLEEELDYLEGSKEELERKIEEFTKKISGFTSQRDRISEEIASFENSEHSKRIKVIDEN 823

Query: 698  YVKWETEKSDFEN---------------KLSECKENYEKYMESLAVLKNYSKTYSVEINN 742
             + +E +K++FEN               K+SE   N ++  E   +L+   + Y   +  
Sbjct: 824  IIAFEKKKNEFENEIKRDAVLIKEVLIPKISELNSNIKELSEKRTILEQNIQFYKNNVEK 883

Query: 743  LNEFLNQK-------------IAEKQQFCEKLLETRT--------EIEKNIQTVN----- 776
              E L  K             + EK++  EK LE            I +N   +N     
Sbjct: 884  NFEILKNKKERYEDLTKDLRELTEKKEAFEKELEILNGEKRRVYGRINQNESQINSLSID 943

Query: 777  ---YNPELHENAKRLYENILNEFNDILRTLERISSEL--KLKNENISYLNEKIQNLSN-- 829
               Y   L E  ++LY         +   +E+IS ++  K+K  ++  L     +L    
Sbjct: 944  KAKYETRLEEEDRKLY---------VCENIEQISEDITSKIKEFDVDALESHQIDLEGHI 994

Query: 830  KKEEKKKIEEFKEYLDKIKR--EIFSKDGFQKYLREKYIPLIQ---RHTNQIF------- 877
            KK E   +    +Y   + R  E+F K    +   +KY+ LI+   +   ++F       
Sbjct: 995  KKLEPVNMRAIDDYQYIVDRYDELFEKRTDYENEEKKYLHLIEEVSKRKKEVFMDVYLKV 1054

Query: 878  -QEFELPYSHI---------QLKDDYS--LIVDGLP-------VETLSGGEQIAVSLALR 918
             + +E  Y+ I           +D +S  L++D  P       ++ +SGGE+   +LA  
Sbjct: 1055 AENYEKIYTEIGGSGKLSLENPEDPFSGGLLIDASPMNKKLQSLDVMSGGEKSLTALAFL 1114

Query: 919  LGISKAVCNNIECIILDEPTAYLDEDRRKNLLNIFKNIKTINQMAIITHHQELEQIAD 976
              I     N     +LDE  A LD      +  + KN    +Q  +I+H +++   +D
Sbjct: 1115 FAIQH--LNPAPFYVLDEVDAALDTKNAGLIGEMIKNASKDSQFIVISHREQMISKSD 1170