Pairwise Alignments

Query, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2

Subject, 1048 a.a., exonuclease, dsDNA, ATP-dependent (NCBI) from Escherichia coli BW25113

 Score = 91.3 bits (225), Expect = 3e-22
 Identities = 197/1096 (17%), Positives = 447/1096 (40%), Gaps = 175/1096 (15%)

Query: 1    MIIKNIKMENFRSHRNT-SINF------SKGITSIIGQNGSGKSSIFQAMNFALF--APR 51
            M I +++++N  S +    I+F      S G+ +I G  G+GK+++  A+  AL+   PR
Sbjct: 1    MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60

Query: 52   GNNFRIE--NLMQQGAASFSVELEFEMMGNTYLV--KRKRFQHKTDDKLYV--------- 98
             +N      +LM +  A    E+EFE+ G  Y     + R +++ D  L V         
Sbjct: 61   LSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCA 120

Query: 99   NGKLNAESASEINKKIEEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLGIE 158
            +GK+ A+   +  +    +  +D   F+ ++ + QG+ A  +   P++R E++ +L G E
Sbjct: 121  DGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTE 180

Query: 159  KYEKASEKMNIVKKSYEETLLKLEGE--------------LTQEPEILENLEK------- 197
             Y + S  +    KS    L KL+ +              LT   ++L + EK       
Sbjct: 181  IYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQ 240

Query: 198  ----LKNEVSESEILKEEILKKYENLEKLKLEKNSEILQME---------------EKFA 238
                  N ++  + L++E  ++ + L++   E+     Q+                E+ A
Sbjct: 241  QEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIA 300

Query: 239  ENNQLKENLKDIISEIKNINLEIQNFKNSL-NLVAEESKNISENEENYKKYLELELKIKE 297
            E++    +++  I E+          + S+ +  A++S  + + +++   +L+   + ++
Sbjct: 301  EHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQ 360

Query: 298  LNNKLIGHKSNY----------ESYNKLKTIEESLLKELGVLKESLKDNKKNPDELKENL 347
             NN+  G ++ +            + +  T  E  L  L  +  +L       DE+   L
Sbjct: 361  WNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTL-----TADEVATAL 415

Query: 348  KENDEKILILDKIKEKIKELEFIEKQIYEIKIHKKTVETLFDSVKIYDDSIKTFEELKTK 407
             ++ E+  +   +     ++   +K++ ++++                 +I+   + +T+
Sbjct: 416  AQHAEQRPLRQHLVALHGQIVPQQKRLAQLQV-----------------AIQNVTQEQTQ 458

Query: 408  KNSYENLLKEKFDLEKKLQNETDEKTKLISELTDFEKIEEKINLE------------NEL 455
            +N+  N +++++  ++K Q   D KT    E        ++  L+            +  
Sbjct: 459  RNAALNEMRQRY--KEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPA 516

Query: 456  KEKYEDLSEKIDKLNEIVLKKESKISEYKNSKAELEKTKDSCHVCQSKITEEKKQELLEK 515
             E Y+ L   +++   + L  E+++ +     A L    D+    Q +  E + Q L + 
Sbjct: 517  VEAYQALEPGVNQSRLLAL--ENEVKKLGEEGATLRGQLDAI-TKQLQRDENEAQSLRQD 573

Query: 516  YNSEIQNEQLSTESLKKQLEII------LNKKEKMKVKLNEIDSFKLKYGELKEKKNYSL 569
              +  Q  Q  T SL   L+ +      L+ +++ + +L  +       G++       +
Sbjct: 574  EQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQII 633

Query: 570  KVEESIIETTE-KLNELTGKINEYSSLNDEISLI-------------ENKLKNLENDYKN 615
            + ++ I +  +  L  LTG        ++E S +             +N+L  L+N  + 
Sbjct: 634  QYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQ 693

Query: 616  CNYSSQFLTKNDESEFLTKKLELSKIIGDYDSS-KIENEKKSLENLKDELKNTIYNLERE 674
                 + L ++DE     + + L      ++    + +++++L+        ++   + +
Sbjct: 694  LTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQ 753

Query: 675  IN--LKKELKNIQNDISSKIGIVECYVKWETEKSDFENKLSECKENYEKYMESLAVLKNY 732
             +  L+  + + Q    + +   +   + E  K + EN+  + +    +  E+LA  + +
Sbjct: 754  FDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQH 813

Query: 733  SKTYSVEINNLNEFLNQKIAEKQQFCEKLLETRTEIEKNIQTVNYNPELHENAKRLYENI 792
                 + +    E + Q++A+  Q   KL E  T             E+ +  K+  +N 
Sbjct: 814  RPDDGLALTVTVEQIQQELAQTHQ---KLRENTTS----------QGEIRQQLKQDADNR 860

Query: 793  LNEFNDILRTLERISSELKLKNENISYLNEKIQNLSNKKEEKKKIEEFKEYLDKIKREIF 852
              +     +TL +  +++  + E+  YLN  I +        K+ ++F+++   +  +  
Sbjct: 861  QQQ-----QTLMQQIAQMTQQVEDWGYLNSLIGS--------KEGDKFRKFAQGLTLDNL 907

Query: 853  SKDGFQKYLREKYIPLIQRHTNQIFQEFELPYSHIQLKDDYSLIVDGL-PVETLSGGEQI 911
                 Q+  R     L+QR  ++  +        +++ D +    D +    TLSGGE  
Sbjct: 908  VHLANQQLTRLHGRYLLQRKASEALE--------VEVVDTWQ--ADAVRDTRTLSGGESF 957

Query: 912  AVSLALRLGISKAVCN--NIECIILDEPTAYLDEDRRKNLLNIFKNIKTINQ-MAIITHH 968
             VSLAL L +S  V +   I+ + LDE    LD +     L+    +    + + +I+H 
Sbjct: 958  LVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHV 1017

Query: 969  QELEQIADNIVKVRKI 984
            + +++     +KV+KI
Sbjct: 1018 EAMKERIPVQIKVKKI 1033