Pairwise Alignments

Query, 180 a.a., DNA-directed RNA polymerase subunit D from Methanococcus maripaludis S2

Subject, 333 a.a., DNA-directed RNA polymerase subunit alpha from Pseudomonas putida KT2440

 Score = 40.0 bits (92), Expect = 4e-08
 Identities = 45/200 (22%), Positives = 90/200 (45%), Gaps = 38/200 (19%)

Query: 10  SFSSALRRIMISEVPTYAIEN------VYFYENTSSMYDEVLAHRLGLIPIKGVPVSGDE 63
           +  +ALRRI++S +P  A+        ++ Y     + ++V+   L L  +  + + G +
Sbjct: 38  TLGNALRRILLSSMPGCAVVEAEIDGVLHEYSAIEGVQEDVIEILLNLKGL-AIKLHGRD 96

Query: 64  VIVLTISKEGPCTVYSSDLKSESG-EPAFENIPIVKLAEDQKLELETEALVGTG------ 116
            + LT+SK+G   V ++D++ +   E    +  I  LA +  L ++     G G      
Sbjct: 97  EVTLTLSKKGSGVVTAADIQLDHDVEIVNPDHVIANLASNGALNMKLTVARGRGYEPADS 156

Query: 117 --------------KIHAKWQPC--------NASYKQISN-DEVEFKIESFGNMDAEDII 153
                         ++ A + P         NA  +Q +N D++   +E+ G +D E+ I
Sbjct: 157 RQTDEDESRSIGRLQLDASFSPVRRIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAI 216

Query: 154 RSSLEILKNKAEKFLLELEG 173
           R +  IL+ +   F ++L+G
Sbjct: 217 RRAATILQQQLAAF-VDLKG 235