Pairwise Alignments

Query, 52 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 48.9 bits (115), Expect = 3e-11
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 7  CVGCAGCVPFCPVGAI--SAFGKAEIDTEMCTNCAVCKDYCPLDAI 50
          C+ C  C   CP GAI  + +G   ++ ++CT C +CK+ CP+D I
Sbjct: 45 CITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDII 90



 Score = 43.1 bits (100), Expect = 2e-09
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 5   DKCVGCAGCVPFCPVGAISAFGKAEIDTEMCTNCAVCKDYCPLDAI 50
           D CV C  C   CP  AI    K EI+TE C  C+ C + CP  AI
Sbjct: 428 DYCVKCGLCTIICPNDAID---KGEINTEKCEYCSACVNICPTRAI 470



 Score = 42.4 bits (98), Expect = 3e-09
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 10/48 (20%)

Query: 6   KCVGCAGCVPFCPVGAISAFGKAEIDTEM---CTNCAVCKDYCPLDAI 50
           KCV C  C+  CP   I       I+ EM   CT C +C + CP+DAI
Sbjct: 180 KCVECGKCIYLCPKDTI-------IEAEMVDGCTRCNICNEVCPVDAI 220



 Score = 39.3 bits (90), Expect = 3e-08
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 7   CVGCAGCVPFCPVGAISAFGKAE---IDTEMCTNCAVCKDYCPLDAIS 51
           CV C  C+  CP  AIS   +++   ID E C  C  C   CP DAI+
Sbjct: 321 CVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAIT 368



 Score = 35.8 bits (81), Expect = 3e-07
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 2   EILDKCVGCAGCVPFCPVGAISAFGKAEIDTEMCTNCAVCKDYCPLDAI 50
           E++D C  C  C   CPV AI  +G+    TE C  C  C   CP D +
Sbjct: 200 EMVDGCTRCNICNEVCPVDAIE-YGQV---TENCILCGNCISKCPKDVL 244



 Score = 35.8 bits (81), Expect = 3e-07
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 2   EILDKCVGCAGCVPFCP--VGAISAFGKAEIDTEM-------CTNCAVCKDYCPLDAI 50
           ++ + C+ C  C+  CP  V  IS F   +   ++       C NC +C D CP +A+
Sbjct: 224 QVTENCILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNAL 281



 Score = 34.7 bits (78), Expect = 6e-07
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 7   CVGCAGCVPFCPVGAIS-AFGKAEIDTEMCTNCAVCKDYCP 46
           C+ C  CV  CP  A+    GK   D + CT C  C   CP
Sbjct: 266 CINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCVKECP 306



 Score = 34.3 bits (77), Expect = 8e-07
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 7   CVGCAGCVPFCPVGAIS----AFGKAEIDTEMCTNCAVCKDYCPLDA 49
           C GC  C   CP+  I     + GK+   T MC  C +C   CP +A
Sbjct: 75  CTGCGICKNVCPIDIIDIREDSTGKS-YPTGMCVMCGLCTTECPYNA 120



 Score = 33.5 bits (75), Expect = 1e-06
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 7   CVGCAGCVPFCPVGAISAFGKAEIDTEMCTNCAVCKDYCPLDAIS 51
           C  C  CV  CP G      K E     C  C +C   CP DAIS
Sbjct: 295 CTLCNTCVKECPQGV--RINKGEFVDGGCVLCELCIKECPEDAIS 337



 Score = 33.1 bits (74), Expect = 2e-06
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 11/59 (18%)

Query: 5   DKCVGCAGCVPFCPVGAI-SAFGKAEI----------DTEMCTNCAVCKDYCPLDAISE 52
           D CV C  C   CP   I +  G  ++          D + C  C +C   CP DAI +
Sbjct: 389 DNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAIDK 447



 Score = 29.6 bits (65), Expect = 2e-05
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 11/57 (19%)

Query: 5   DKCVGCAGCVPFCPVGAISA------FGKAEIDTEM-----CTNCAVCKDYCPLDAI 50
           ++C+ C  C   CP  AI+       F   ++ +++     C  C  C  +CP D I
Sbjct: 350 EECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVI 406



 Score = 26.2 bits (56), Expect = 2e-04
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 30  IDTEMCTNCAVCKDYCPLDAISE 52
           ID++ C  C  C   CP D I E
Sbjct: 176 IDSKKCVECGKCIYLCPKDTIIE 198



 Score = 25.8 bits (55), Expect = 3e-04
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 5   DKCVGCAGCVPFCPVGAISAF 25
           +KC  C+ CV  CP  AI  +
Sbjct: 453 EKCEYCSACVNICPTRAIRIY 473