Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 398 a.a., SAM-dependent methyltransferase from Pseudomonas simiae WCS417

 Score =  158 bits (400), Expect = 2e-43
 Identities = 113/357 (31%), Positives = 179/357 (50%), Gaps = 33/357 (9%)

Query: 33  KTEEIVDITYNGNFVAKALY-DPKFPLIKILTRENEEIDKDFFFKRINNANNYRTDILNY 91
           KT  IV ++ N    A+ L  D K PL           DK     R+N A + R D L  
Sbjct: 52  KTLGIVAMSPNNLICARLLSRDIKLPL-----------DKSLLVHRLNVALSLR-DRLFD 99

Query: 92  KDTYRMIYAEADYLPSIILDKYNKIASIQISSKIMDNYSDLIFECISEITDVETMYVQSG 151
           K  YR++Y ++D LP +++D++  I  +QI+S  M+ + + +   ++++     +  ++ 
Sbjct: 100 KPFYRLVYGDSDLLPGLVVDRFGDILVVQIASATMEAHKEDVIAALTQVLKPSGILFKND 159

Query: 152 KKGSDVKTKIFGDKSQIETV---------ISEGNAKFNVNM-KGHKTGFFLDQRDNRIDL 201
               D +    G    +ETV         + E   KF   + +G KTG+F D R NR  L
Sbjct: 160 SAARDAE----GLNRYVETVFGLVPEWVALEENGVKFEAPVIQGQKTGWFYDHRMNRARL 215

Query: 202 ENYVKPGDKVLDICSYTGGFAVHAGIKGG-EVTAVDLSEKALAVAEENMELNR-VKNYNC 259
             Y K G +VLD+ SY GG+ V A   G  EV  VD S  AL   E N  LN   +   C
Sbjct: 216 APYAK-GKRVLDLYSYIGGWGVQAAAFGASEVFCVDASAFALDGVERNAALNGFAEKMTC 274

Query: 260 MVSNAFDAMKEMIKNNEKFDVVVLDPPAFTDSSKDIKNALNAYNSMNYLGLKLAKR--IL 317
           +  + F+A+KE+  + E+FDV+V DPPAF    KD+KN   AY  +N   ++L  +  IL
Sbjct: 275 IEGDVFEALKELKASEERFDVIVADPPAFIKRKKDMKNGEGAYRRLNEQAMRLLSKDGIL 334

Query: 318 VTCSCSHHIDRESFKHTIVSSSLRAKKEIRQIGSYRTQAPDHIITMANKDLEYLKCL 374
           V+ SCS H+  +  ++ +++S+    + I+ +     Q PDH +  A  +  Y+K +
Sbjct: 335 VSASCSMHLPEDDLQNILLTSARHLDRNIQML-ERGGQGPDHPVHPAIAETRYIKSI 390