Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 404 a.a., 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) from Variovorax sp. SCN45

 Score =  127 bits (319), Expect = 5e-34
 Identities = 108/362 (29%), Positives = 170/362 (46%), Gaps = 33/362 (9%)

Query: 41  TYNGNFVAKALYDPKFPLIKILTR-----ENEEIDKDFFFKRINNANNYRTDILNYKDTY 95
           +++G F+A A + P     KI  R     E + ID  F       A   R       D  
Sbjct: 41  SHDGAFLAWAAFSPAS---KIRARAWSFVETQRIDAAFLASVCARAVAARGLFDLQSDGV 97

Query: 96  RMIYAEADYLPSIILDKYNKIASIQISSKIMDNYSDLIFECISEITDVETMYVQSGKKGS 155
           R+++ EAD LP +I+D+Y      Q  S  ++ + D++ + + + T +  +Y +S   G 
Sbjct: 98  RVVHGEADGLPGLIVDRYGDTLVAQFLSAGVERWKDVLADALLKATGLAKLYERSDASGR 157

Query: 156 D------VKTKIFGDKSQIETVISEGNAKFNVNMK-GHKTGFFLDQRDNRIDLENYVKPG 208
           +      V   + GD    E VI E   K ++++  GHKTGF+LDQRD+R       +  
Sbjct: 158 EREGLKPVTGWLRGD-GPTEIVIREHGWKLSLDIATGHKTGFYLDQRDSRQRFAELAQHR 216

Query: 209 D--KVLDICSYTGGFAVHA--------GIKGGEVTAVDLSEKALAVAEENMELNRVKNYN 258
              +VL+   YTGGF V A         ++G ++ +VD S  AL  A  ++ LN  +   
Sbjct: 217 RFRRVLNCFCYTGGFTVAALAGLKAANALQGAQLVSVDSSLPALERARGHLALNGFEGQG 276

Query: 259 C----MVSNAFDAMKEMIKNNEKFDVVVLDPPAFTDSSKDIKNALNAYNSMNYLGLKLAK 314
                + +N    ++E I     FD +VLDPP F  ++   + A  AY  +N L LKL +
Sbjct: 277 IEAEFLDANVNTVLREFIDQGRTFDAIVLDPPKFAPTAAHAERAARAYKDINRLALKLLE 336

Query: 315 --RILVTCSCSHHIDRESFKHTIVSSSLRAKKEIRQIGSYRTQAPDHIITMANKDLEYLK 372
              +L+T SCS  I  + F   + S+ + A  +   I      APDH +T+   + EYLK
Sbjct: 337 PGGVLLTFSCSGGISADLFHKIVASAGIDAGVD-GYIAERLGAAPDHPMTIEFPEGEYLK 395

Query: 373 CL 374
            L
Sbjct: 396 GL 397