Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 398 a.a., 23S rRNA (cytosine(1962)-C(5))-methyltransferase from Pseudomonas sp. S08-1

 Score =  157 bits (396), Expect = 6e-43
 Identities = 103/330 (31%), Positives = 172/330 (52%), Gaps = 22/330 (6%)

Query: 60  KILTRENEEI-DKDFFFKRINNANNYRTDILNYKDTYRMIYAEADYLPSIILDKYNKIAS 118
           ++L+R+ + + DK     R+N A + R  + + K  YR++Y ++D LP +++D++     
Sbjct: 68  RLLSRDVKHVLDKSLLVHRLNVALSLRERLFD-KPFYRLVYGDSDLLPGLVVDRFGDHLV 126

Query: 119 IQISSKIMDNYSDLIFECISEITDVETMYVQSGKKGSDVKTKIFGDKSQIETV------- 171
           +Q++S  M+   D + E + ++     +  ++     D +    G +  ++T        
Sbjct: 127 VQLASATMERSKDALIEALVQVLKPRGILFKNDSAARDAE----GLERYVDTAFGVVPEW 182

Query: 172 --ISEGNAKFNVN-MKGHKTGFFLDQRDNRIDLENYVKPGDKVLDICSYTGGFAVHAGIK 228
             + E   KF    ++G KTG+F D R NR  L  YV+ G +VLD+ SY GG+ V A   
Sbjct: 183 VDLEENGVKFQAPVLEGQKTGWFYDHRMNRARLAPYVQ-GKRVLDLFSYIGGWGVQAATF 241

Query: 229 GG-EVTAVDLSEKALAVAEENMELNRV-KNYNCMVSNAFDAMKEMIKNNEKFDVVVLDPP 286
           G  EV  VD S  AL   E N  LN V +   C+  + F A+KE+    E+FDV+V DPP
Sbjct: 242 GASEVFCVDASGFALDGVERNATLNGVAEKVTCVEGDVFAALKELKSAEERFDVIVADPP 301

Query: 287 AFTDSSKDIKNALNAYNSMNYLGLKLAKR--ILVTCSCSHHIDRESFKHTIVSSSLRAKK 344
           AF    KDIKN   AY  +N   +++  +  ILV+ SCS H++ +  ++ +++S+    +
Sbjct: 302 AFIKRKKDIKNGEAAYRRLNETAMRMLNKDGILVSASCSMHLEEDHLQNILLTSARHLDR 361

Query: 345 EIRQIGSYRTQAPDHIITMANKDLEYLKCL 374
            I Q+     Q PDH +  A  +  Y+K L
Sbjct: 362 NI-QLLERGAQGPDHPVHPAIAETRYIKSL 390