Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 403 a.a., LSU m5C1962 methyltransferase RlmI from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  147 bits (370), Expect = 7e-40
 Identities = 109/363 (30%), Positives = 191/363 (52%), Gaps = 24/363 (6%)

Query: 28  KDDFSKTEEIVDITYNGNFVAKALYDPKFPL-IKILTREN-EEIDKDFFFKRINNANNYR 85
           K +  +T +IVD  + G ++A+  + P   +  ++ T +  E ID  FF +R+  A  +R
Sbjct: 40  KANLGETIDIVD--HQGKWLARGAWSPASQIRARVWTFDKAESIDIAFFTRRLRQAQQWR 97

Query: 86  TDILNYKD---TYRMIYAEADYLPSIILDKYNKIASIQISSKIMDNYSDLIFECISE--- 139
            D L  KD   +YR+I  E+D LP + +D++     +Q+ S   +     +   +     
Sbjct: 98  -DWLAKKDGLDSYRLIAGESDGLPGVTIDRFGHFLVLQLLSAGAEYQRAALISALQTCYP 156

Query: 140 ---ITDVETMYVQSGKKGSDVKTKIFGDKSQIETVISEGNAKFNVNMKG-HKTGFFLDQR 195
              I D   + V+  +  +  +  + G+       I E   K  V+++G HKTG++LDQR
Sbjct: 157 DCAIYDRSDVAVRKKEGMALTQGPVTGELPPALLPIEEHGMKLLVDIQGGHKTGYYLDQR 216

Query: 196 DNRIDLENYVKPGDKVLDICSYTGGFAVHAGIKGG--EVTAVDLSEKALAVAEENMELNR 253
           D+R+    YV+   +VL+  SYTGGFAV A + GG  +V +VD S+ AL +A +N+ELN+
Sbjct: 217 DSRLATRRYVE-NQRVLNCFSYTGGFAVSA-LMGGCRQVVSVDTSQDALDIARQNVELNQ 274

Query: 254 V--KNYNCMVSNAFDAMKEMIKNNEKFDVVVLDPPAFTDSSKDIKNALNAYNSMNYLGLK 311
           +       +  + F  ++   ++ EKFDV+++DPP F ++   +  A   Y  +N L ++
Sbjct: 275 LDLSKAEFVRDDVFKLLRAYREHGEKFDVIIMDPPKFVENKSQLMGACRGYKDINMLAIQ 334

Query: 312 LAK--RILVTCSCSHHIDRESFKHTIVSSSLRAKKEIRQIGSYRTQAPDHIITMANKDLE 369
           L     IL+T SCS  +  + F+  I  +++ A ++++ I  +R QA DH +     +  
Sbjct: 335 LLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFR-QAADHPVIATYPEGL 393

Query: 370 YLK 372
           YLK
Sbjct: 394 YLK 396