Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 391 a.a., 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI from Escherichia coli ECRC62

 Score =  154 bits (390), Expect = 3e-42
 Identities = 111/371 (29%), Positives = 195/371 (52%), Gaps = 21/371 (5%)

Query: 20  IYKNAIVNKDDFSKTEEIVDIT-YNGNFVAKALYDPKFPL-IKILTRE-NEEIDKDFFFK 76
           ++  A+   +  +   E +DI  + G ++A+  Y P   +  ++ T + +E ID  FF +
Sbjct: 17  VFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSR 76

Query: 77  RINNANNYRTDILNYKD---TYRMIYAEADYLPSIILDKYNKIASIQISSKIMDNYSDLI 133
           R+  A  +R D L  KD   +YR+I  E+D LP I +D++     +Q+ S   +     +
Sbjct: 77  RLQQAQKWR-DWLAQKDGLDSYRLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAAL 135

Query: 134 FECISEITDVETMYVQSG-----KKGSDV-KTKIFGDKSQIETVISEGNAKFNVNMK-GH 186
              +  +     +Y +S      K+G ++ +  + G+       I E   K  V+++ GH
Sbjct: 136 ISALQTLYPECAIYDRSDVAVRKKEGMELTQGLVTGELPPALLPIEEHGMKLLVDIQHGH 195

Query: 187 KTGFFLDQRDNRIDLENYVKPGDKVLDICSYTGGFAVHAGIKG-GEVTAVDLSEKALAVA 245
           KTG++LDQRD+R+    YV+   +VL+  SYTGGFAV A + G  +V +VD S++AL +A
Sbjct: 196 KTGYYLDQRDSRLATRRYVE-NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIA 254

Query: 246 EENMELNRV--KNYNCMVSNAFDAMKEMIKNNEKFDVVVLDPPAFTDSSKDIKNALNAYN 303
            +N+ELN++       +  + F  ++      EKFDV+V+DPP F ++   +  A   Y 
Sbjct: 255 RQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYK 314

Query: 304 SMNYLGLKLAKR--ILVTCSCSHHIDRESFKHTIVSSSLRAKKEIRQIGSYRTQAPDHII 361
            +N L ++L     IL+T SCS  +  + F+  I  +++ A ++++ I  +R QA DH +
Sbjct: 315 DINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFR-QAADHPV 373

Query: 362 TMANKDLEYLK 372
                +  YLK
Sbjct: 374 IATYPEGLYLK 384