Pairwise Alignments

Query, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

Subject, 396 a.a., 23S rRNA m(5)C1962 methyltransferase, SAM-dependent from Escherichia coli BL21

 Score =  155 bits (392), Expect = 2e-42
 Identities = 111/371 (29%), Positives = 196/371 (52%), Gaps = 21/371 (5%)

Query: 20  IYKNAIVNKDDFSKTEEIVDIT-YNGNFVAKALYDPKFPL-IKILTRE-NEEIDKDFFFK 76
           ++  A+   +  +   E +DI  + G ++A+  Y P   +  ++ T + +E ID  FF +
Sbjct: 22  VFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSR 81

Query: 77  RINNANNYRTDILNYKD---TYRMIYAEADYLPSIILDKYNKIASIQISSKIMDNYSDLI 133
           R+  A  +R D L  KD   +YR+I  E+D LP I +D++     +Q+ S   +     +
Sbjct: 82  RLQQAQKWR-DWLAQKDGLDSYRLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAAL 140

Query: 134 FECISEITDVETMYVQSG-----KKGSDV-KTKIFGDKSQIETVISEGNAKFNVNMK-GH 186
              +  +    ++Y +S      K+G ++ +  + G+       I E   K  V+++ GH
Sbjct: 141 ISALQTLYPECSIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIEEHGMKLLVDIQHGH 200

Query: 187 KTGFFLDQRDNRIDLENYVKPGDKVLDICSYTGGFAVHAGIKG-GEVTAVDLSEKALAVA 245
           KTG++LDQRD+R+    YV+   +VL+  SYTGGFAV A + G  +V +VD S++AL +A
Sbjct: 201 KTGYYLDQRDSRLATRRYVE-NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIA 259

Query: 246 EENMELNRV--KNYNCMVSNAFDAMKEMIKNNEKFDVVVLDPPAFTDSSKDIKNALNAYN 303
            +N+ELN++       +  + F  ++      EKFDV+V+DPP F ++   +  A   Y 
Sbjct: 260 RQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYK 319

Query: 304 SMNYLGLKLAKR--ILVTCSCSHHIDRESFKHTIVSSSLRAKKEIRQIGSYRTQAPDHII 361
            +N L ++L     IL+T SCS  +  + F+  I  +++ A ++++ I  +R QA DH +
Sbjct: 320 DINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFR-QAADHPV 378

Query: 362 TMANKDLEYLK 372
                +  YLK
Sbjct: 379 IATYPEGLYLK 389