Pairwise Alignments

Query, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

Subject, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

 Score =  238 bits (606), Expect = 9e-67
 Identities = 168/557 (30%), Positives = 281/557 (50%), Gaps = 57/557 (10%)

Query: 8   KRLGTKLIIYSIITALIPIVMLGAVSTDTINTEMTKQAQEKINDDLNTAESVVNLKLDKI 67
           K+LGTK++I+SII+ L+PI++ G V+ DTI   +   AQ+ IN D+  A+ ++  +  + 
Sbjct: 7   KKLGTKMLIFSIISVLVPILVFGFVANDTIAGILDDNAQKSINTDIKIADQIIESRFIEF 66

Query: 68  SSLNKYIISNDNTITSLKNNNTAELKTLAISYKNTSAPDFVVFFDGQGNVVARSNSDVTG 127
            S+ +Y  +  + ITS+ N ++ +L     +++     DFV   D  GN +A   S    
Sbjct: 67  ESICEYATNKADVITSVSNKDSEKLSIGVETFRAAINSDFVGVLDSNGNTIA---STAGP 123

Query: 128 DNSYEDLFKKVVNSTGYTSIEVLDKDSIKYENVGELVNIDIKGTEDSINYSDSVQDSAMA 187
           D     + +K++ S    S E +  ++    N                NY     DSA+ 
Sbjct: 124 DIQIGSVAQKLITSGTKRSFEPISANTAYKINK---------------NYKVENVDSALG 168

Query: 188 LVSIEPIYDKNGKLLGAAMAADILNKDYSIVDTVKDASKDATTIFLDGVRVSTNVQDNGG 247
           +V   PIY+ NG ++G+ +  DILN +  IVD VK  + D  T  L   R+ST++ +NG 
Sbjct: 169 MVVTYPIYE-NGNVVGSIIIIDILNNNNEIVDQVKADTGDEATFSLGKQRISTSLIENGK 227

Query: 248 RAIGTLVSEEVYNHVVLDGKTYYGRAFVVNEWYLTAYEPIYDSDNKIIGMLFVGTPESKF 307
           R +GT +S+EV+ +V+     Y G A V+    +TAY P+ D+++ +IGM+FVG P++  
Sbjct: 228 RPVGTSISDEVWTYVMSQNAVYKGTANVLGTELITAYAPLLDANDDVIGMVFVGAPQTDA 287

Query: 308 LALQADVRNQTFVVGLIGLLIALIVSYLINRGIIKPLEQLKQGAEWVSNGRYDQKVIVDS 367
           +A + D RN+  ++ L G+LIA +++   NR I KP+E+LK+G E   NG YD K  V +
Sbjct: 288 IAAKNDARNKIIMLALFGILIAFLITSYSNRKITKPIEELKKGTEEFGNGNYDYKTTVKT 347

Query: 368 DDEFGELAKAFNKMATQI-------------------NISDDKLKKHAEELKISYNELKE 408
            DE  EL+ +FNKMA  +                   N+SD   +    +     +E +E
Sbjct: 348 GDELQELSDSFNKMAENVKNLMKTMDMDKLELANLLNNVSDVMNRVAKGDFTARADESRE 407

Query: 409 LDKLKSELIAVVSH------ELRTPLTSIKGYVELVLDGTMGAINDSQKKCLQVADDNIV 462
            +KL+  +   VS+      ELR  L  +   ++ V D   GA    ++   QVA+    
Sbjct: 408 NNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGA----EETATQVAE---- 459

Query: 463 RLRRLIESMLDLS-KIERGELEMYREKVNLRSIVCDVIEYLKPLATEKNIKLNKEVEDIA 521
              ++ E+  D S K++    E+     N + +     E +K   + + IK N E+    
Sbjct: 460 AATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETVK---SSEEIKENSEIGVEK 516

Query: 522 IEADKDRITQVLTNLIE 538
           +E    R+ Q +TN+I+
Sbjct: 517 VENAISRM-QSITNVID 532



 Score = 33.1 bits (74), Expect = 4e-05
 Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 28/196 (14%)

Query: 341 IKPLEQLKQ----GAEWVSNGRYDQKVIVDSDDEFGELAKAFNKMATQINISDDKLKKHA 396
           +K  E++K+    G E V N     + I +  DE G+  K   +   +IN     +K  A
Sbjct: 500 VKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIA 559

Query: 397 EE-----LKISYNELKELDKLKSELIAVVSHELRTPLTSIKGYVELV---LDGTMGAIND 448
           E+     L  S    +  D  K    AVV+ E++     IK  VE +   +DG    I D
Sbjct: 560 EQTGLLALNASIEAARAGDAGKG--FAVVASEIKALAEEIKKSVEDINHTIDGVNSRIED 617

Query: 449 SQKKCLQVADD---NIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPL 505
           +    L+  D+    ++ +  + +++L +           +E VN  +I  + I++    
Sbjct: 618 TVDLGLKGKDEVDKGVIAIDEVNDALLKI-----------KESVNESAIKINGIKHGAQN 666

Query: 506 ATEKNIKLNKEVEDIA 521
           A+E      K  +DIA
Sbjct: 667 ASENTEGALKNAQDIA 682



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 32/172 (18%), Positives = 73/172 (42%), Gaps = 18/172 (10%)

Query: 372 GELAKAFNKMATQINISDDKLKKHAEELKISYNELKELDKLKSELIAVVSHELRTPLTSI 431
           G+  K F  +A++I    +++KK  E++         +D + S +   V   L+      
Sbjct: 577 GDAGKGFAVVASEIKALAEEIKKSVEDIN------HTIDGVNSRIEDTVDLGLKGKDEVD 630

Query: 432 KGYVELVLDGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNL 491
           KG +       +  +ND+  K  +  +++ +++  +     + S+   G L+  ++   L
Sbjct: 631 KGVI------AIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAAL 684

Query: 492 RSIVCDVIEYLKPLATEKNIKLNKEVEDIAIEADKDRITQVLTNLIENAIKF 543
                   E +    T    +LN  +E+I + A++  +T V   + E + +F
Sbjct: 685 SEEFTATAEEV----TASTEELNSIIEEIRVIAEE--LTHVSERVSEKSNQF 730