Pairwise Alignments

Query, 539 a.a., fumarate reductase subunit A from Methanococcus maripaludis S2

Subject, 602 a.a., Succinate dehydrogenase flavoprotein subunit (EC 1.3.5.1) from Variovorax sp. SCN45

 Score =  298 bits (764), Expect = 3e-85
 Identities = 192/553 (34%), Positives = 299/553 (54%), Gaps = 46/553 (8%)

Query: 4   DVLIIGGGGAAARAAIECGQK--NVVIASKGLFGKSGCTVMAEGGYNAVLNE--KDSFEK 59
           DV+I+G GG+  RA+++  +   NV + SK +F     TV A+GG  A L    +D++  
Sbjct: 14  DVVIVGAGGSGMRASLQLARAGLNVAVLSK-VFPTRSHTVAAQGGVGASLGNMSEDNWHY 72

Query: 60  HYSDTMKGGGYINDKKLVDVLVKNAPNEFKNLEKFGCIFDRSESAEFAQRPFGGQSFN-- 117
           H+ DT+KG  ++ D+  ++ + + AP     LE FG  FDR+      QRPFGG + N  
Sbjct: 73  HFYDTIKGSDWLGDQDAIEFMCREAPKVVYELEHFGMPFDRNPDGTIYQRPFGGHTANYG 132

Query: 118 -----RTCYSGDRTGHEMIAGLMEYLNKFERIKILEDTMAIKLIVDEVEENGKKLKKCFG 172
                R C + DRTGH M+  L +  N   R +   + MA+ LI DE  +         G
Sbjct: 133 EKPVQRACAAADRTGHAMLHTLYQK-NVEARTQFFVEWMALDLIRDEEGD-------VVG 184

Query: 173 AVFLDLLNGDIYPVYAKSTILATGGAGQIYPITSNPKQKVGDGFAIAYREGVELVDMEMV 232
              L++  GD++ + AK+ +LATGGAG+I+  ++N     GDG  +A R G+ L DME  
Sbjct: 185 VTALEMETGDLHILQAKTVLLATGGAGRIFQASTNAFINTGDGLGMAARSGIPLQDMEFW 244

Query: 233 QFHPTGMLGTGILVTEAVRGEGGILYNKNKERFMKNYDSKRMELSTRDVVAKAIYNEIQE 292
           QFHPTG+ G G+L+TE  RGEG IL N N ERFM+ Y     +L+ RD V++++  EI+E
Sbjct: 245 QFHPTGVAGAGVLLTEGCRGEGAILLNSNGERFMERYAPTLKDLAPRDFVSRSMDQEIKE 304

Query: 293 GRGIDGG---VYLDVTHLEPEVIKEKLETMFS-QFKLVGVDIRKEPMKVAPTAHHFMGGI 348
           GRG       V L + HL  + I ++L +++        VDI KEP+ V PT H+ MGGI
Sbjct: 305 GRGCGPNKDYVLLKLDHLGADTIHKRLPSVYEIGVNFANVDITKEPIPVVPTIHYQMGGI 364

Query: 349 KIN----------EDCETNISGLFACGEVA-GGLHGANRLGGNALAETQVFGSIAGRNAL 397
             N          ED    ++GL+A GE +   +HGANRLG N+L +  VFG  AG + +
Sbjct: 365 PTNIHGQVVVQKGEDNSAVVNGLYAVGECSCVSVHGANRLGTNSLLDLLVFGRAAGNHIV 424

Query: 398 NYAEEKIDISKV-YDSVEKYIEKLKNTFKGSNSGNNVYSLIDELKNTMWDFVSISRDENG 456
            +A++  +   +  D+ ++ +E+L N  + +  G     +  E++  M    ++ R +  
Sbjct: 425 EFADKLKEHKPLPNDAADRTLERL-NRLEATTGGEYAQDVAGEIRAVMQQHAAVFRKQAS 483

Query: 457 LKTALEKINEIAGKKVLINGVVDFSK--------KLELENMVLVSKIVINSALLRKESRG 508
           +   + KI  +  ++V   G+ D SK         LE++N++ V++  + SA  RKE RG
Sbjct: 484 MDEGVVKIAAVR-ERVKAIGLKDKSKVFNTARIEALEVDNLIEVAQATMVSAAARKECRG 542

Query: 509 AHFRNDYPKTNEE 521
           AH   DY +  ++
Sbjct: 543 AHTVEDYERPADD 555