Pairwise Alignments

Query, 539 a.a., fumarate reductase subunit A from Methanococcus maripaludis S2

Subject, 604 a.a., Succinate dehydrogenase flavoprotein subunit (EC 1.3.5.1) from Sphingobium sp. HT1-2

 Score =  285 bits (728), Expect = 4e-81
 Identities = 180/555 (32%), Positives = 286/555 (51%), Gaps = 46/555 (8%)

Query: 4   DVLIIGGGGAAARAAI---ECGQKNVVIASKGLFGKSGCTVMAEGGYNAVL--NEKDSFE 58
           D +++G GG+  RA +   E G K   I    LF     TV A+GG  A L  N  D + 
Sbjct: 13  DTVVVGAGGSGLRATMGSAEAGLKTACITK--LFPTRSHTVAAQGGIAASLGNNSPDHWT 70

Query: 59  KHYSDTMKGGGYINDKKLVDVLVKNAPNEFKNLEKFGCIFDRSESAEFAQRPFGGQSFN- 117
            H  DT+KG  ++ D+  ++ +V+ AP     LE  G  F R++     QRPFGG   N 
Sbjct: 71  WHMYDTVKGSDWLGDQDAIEYMVREAPAAVIELEHAGVPFSRNQDGTIYQRPFGGHMQNM 130

Query: 118 -------RTCYSGDRTGHEMIAGLMEYLNKFERIKILEDTMAIKLIVDEVEENGKKLKKC 170
                  RTC + DRTGH M+  L +   K++    +E        +D + E+G   K+C
Sbjct: 131 GAGPPVQRTCAAADRTGHAMLHALYQQSLKYDADFYIE-----YFAIDLIMEDGPNGKEC 185

Query: 171 FGAVFLDLLNGDIYPVYAKSTILATGGAGQIYPITSNPKQKVGDGFAIAYREGVELVDME 230
            G + + + +G I+   + + +LATGG G+ Y   ++     GDG  +  R G+ L D+E
Sbjct: 186 RGVIAICMEDGSIHRFRSHAVVLATGGYGRAYFSATSAHSCTGDGGGMVLRAGLPLQDLE 245

Query: 231 MVQFHPTGMLGTGILVTEAVRGEGGILYNKNKERFMKNYDSKRMELSTRDVVAKAIYNEI 290
            VQFHPTG+ G G+L+TE  RGEGG L N   ERFM+ Y     +L++RDVV++++  E+
Sbjct: 246 FVQFHPTGIYGAGVLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRSMAMEM 305

Query: 291 QEGRGI---DGGVYLDVTHLEPEVIKEKLETMFSQFKL-VGVDIRKEPMKVAPTAHHFMG 346
           +EGRG+      ++L + H++P+V+ E+L  +    K+  GVD+ ++P+ V PT H+ MG
Sbjct: 306 REGRGVGEHKDHIFLHLDHIDPKVLAERLPGITESGKIFAGVDLTRQPLPVTPTVHYNMG 365

Query: 347 GI----------KINEDCETNISGLFACGEVA-GGLHGANRLGGNALAETQVFGSIAGRN 395
           GI          K+ +D E  + GLFA GE A   +HGANRLG N+L +  VFG   G  
Sbjct: 366 GIPCNYHGQVVTKVGDDPEVVVPGLFAVGEAACVSVHGANRLGSNSLIDLVVFGRATGLF 425

Query: 396 ALNYAEEKIDISKVYDSVEKYIEKLKNTFKGSNSGNNVYSLIDELKNTMWDFVSISRDEN 455
             +  +       +  +         + ++ +N   +   +  +++ TM    ++ RD  
Sbjct: 426 LKDNLKPNTPHKPLPANAADLALSRLDHYRNANGTTSTADIRMDMQRTMQKHAAVFRDSE 485

Query: 456 GLKTALEKIN---------EIAGKKVLINGVVDFSKKLELENMVLVSKIVINSALLRKES 506
            L   + K+          +IA + ++ N   D  + LEL+N++  +   +  A  RKES
Sbjct: 486 LLADGVVKMQAVNKRLQDVKIADRSLIWN--TDLIETLELDNLMSQAICTMEGAEARKES 543

Query: 507 RGAHFRNDYPKTNEE 521
           RGAH   D+P  ++E
Sbjct: 544 RGAHAHEDFPNRDDE 558