Pairwise Alignments

Query, 442 a.a., FAD-dependent oxidoreductase from Methanococcus maripaludis S2

Subject, 1399 a.a., nitrite reductase small subunit NirD from Dickeya dianthicola 67-19

 Score =  117 bits (292), Expect = 3e-30
 Identities = 91/299 (30%), Positives = 154/299 (51%), Gaps = 36/299 (12%)

Query: 3   VVIIGSGAGGLTTASNIKKHDKNA----KVTVITSDKYIAYSPCAIPYVIGEEIADFDTI 58
           +VIIG+G   L++A  +K+  + A    +VTVI  +   +Y+   +  V+  E    DT 
Sbjct: 5   LVIIGNG---LSSARLVKRLGQLAPQRYRVTVIDREPRDSYNRVLLSSVLAGEKIFEDTQ 61

Query: 59  IMHTPKDYKAKGIDVIVEAEVLDVVSGENKVIYKKDGTET-----ELKYDNLVLATGGTP 113
           +   P       +DV +       ++GE+ +   +D  E       L YD LV ATG  P
Sbjct: 62  LEPAPAT-----MDVTI-------LTGESALSIDRDAREVTTDRRRLAYDQLVFATGSRP 109

Query: 114 FVPPIEGVTLDGVFKVRTIEDGQKITEWAKDTKNVVVAGAGAIGIEIAFGLKEIGLDVTV 173
           F+PP+ G+ L GV   RT++D +++    +  + VVV G G +GIE A  L+  G  VT+
Sbjct: 110 FMPPLPGIDLPGVMGFRTLDDVERMRAAVRQGRPVVVIGGGLLGIEAAAALRLQGATVTL 169

Query: 174 VEMVPQVFPRALDPDMAETVQKYLEEQGIKIILEKPVGKI----------IGNDKVEAVL 223
           +    ++  R LD   ++ +   L E+GI+ +    +  +           GN +VEAV 
Sbjct: 170 LHRHARLMERQLDATASDLLCSRLNERGIRCLTGVQIRALSSNEWSGNEWSGNGQVEAVE 229

Query: 224 VGEET-IPAEMVIMSTGVRSNIELAKSAGCDIGRWAVLTNEKMQTSIPNIYAVGDCVEV 281
           + + T +PA +V+++TGV+   ELA+ +G   GR  +L + +++T+   I A G+C EV
Sbjct: 230 LADGTRLPAGLVVVATGVQPVCELARDSGLACGR-GILADGQLRTADEYISAFGECAEV 287



 Score =  110 bits (275), Expect = 3e-28
 Identities = 74/281 (26%), Positives = 141/281 (50%), Gaps = 10/281 (3%)

Query: 3   VVIIGSGAGGLTTASNIKKHDKNAK--VTVITSDKYIAYSPCAIPYVIGEEIADFDTIIM 60
           +V++G G  G      + +   + +  V V   +++ AY    +        A+  ++ M
Sbjct: 424 LVVVGHGMVGHHFLEQLVERSLHQQYHVVVFGEERHPAYDRVHLSEYFAGRSAE--SLSM 481

Query: 61  HTPKDYKAKGIDVIVEAEVLDVVSGENKVIYKKDGTETELKYDNLVLATGGTPFVPPIEG 120
            +   ++  GI++    +V ++   + + +   +G ET   YD LVLATG  PFVPP+ G
Sbjct: 482 VSDGFFEQHGIELRTGCQVAEI-DRQRRCVRDANGQETP--YDRLVLATGSYPFVPPMAG 538

Query: 121 VTLDGVFKVRTIEDGQKITEWAKDTKNVVVAGAGAIGIEIAFGLKEIGLDVTVVEMVPQV 180
               G    RT++D   I + A++++  VV G G +G+E A  L+++GL+  VVE  P++
Sbjct: 539 NDRPGCLVYRTLDDLDAIADEARESRRGVVVGGGLLGLEAANALRQLGLETHVVEFAPRL 598

Query: 181 FPRALDPDMAETVQKYLEEQGIKIILEKPVGKIIGNDKVEAVL--VGEETIPAEMVIMST 238
               LD   A+ +++ +E  G+++   K    I   ++    +       +  ++V+ S 
Sbjct: 599 MAVQLDDGGAQLLKRKIEALGLQVHTGKETRAITAGEQARHRMNFADGTVLETDLVLFSA 658

Query: 239 GVRSNIELAKSAGCDIG-RWAVLTNEKMQTSIPNIYAVGDC 278
           G+R   +LA+ AG + G R  ++ N+   TS   I+A+G+C
Sbjct: 659 GIRPRDQLARDAGLETGARGGIVINDSCLTSDDAIFAIGEC 699