Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 178 a.a., NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 54.7 bits (130), Expect = 2e-12
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 94  PITEMPQYPKIK-----RGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEIT 148
           P  + P  P+ +     R  E  + +C+ C+ CE VCP  AI +E +V    S       
Sbjct: 53  PEEKTPLSPRFRGLHALRRYENGEERCIACKLCEAVCPAMAITIESDVRADGSRRTTRYD 112

Query: 149 IKKDDCVLCGICAEYCPADAI 169
           I    C+ CG C E CP D+I
Sbjct: 113 IDLTKCIFCGFCEESCPVDSI 133



 Score = 48.9 bits (115), Expect = 1e-10
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 151 KDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIE 210
           ++ C+ C +C   CPA AI  I +D+ A          IDL  C++C  CE++CP ++I 
Sbjct: 76  EERCIACKLCEAVCPAMAIT-IESDVRADGSRRTTRYDIDLTKCIFCGFCEESCPVDSI- 133

Query: 211 AICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCG 246
                     +    E +GE +G     KE+ ++ G
Sbjct: 134 ---------VETHVFEYHGEKRGDLYFTKEMLLAVG 160



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 271 EPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDV--CILCGACTHSCPVDAL 326
           E  C AC  C +VCP  A+      +          + D+  CI CG C  SCPVD++
Sbjct: 76  EERCIACKLCEAVCPAMAITIESDVRADGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 133



 Score = 40.4 bits (93), Expect = 3e-08
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 192 DACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANI 251
           + C+ CK+CE  CP  AI        + S ++          + +ID   C+ CG+C   
Sbjct: 77  ERCIACKLCEAVCPAMAIT-------IESDVRADG--SRRTTRYDIDLTKCIFCGFCEES 127

Query: 252 CPADAIEVEKPFE 264
           CP D+I     FE
Sbjct: 128 CPVDSIVETHVFE 140



 Score = 40.4 bits (93), Expect = 3e-08
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 32  CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDIS-EKCVLCGMCACACPFDAV 86
           C+ C +C  +CP  AI +        G     + DI   KC+ CG C  +CP D++
Sbjct: 79  CIACKLCEAVCPAMAITIES-DVRADGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 133



 Score = 40.0 bits (92), Expect = 4e-08
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 239 KELCVSCGWCANICPADAIEVEKPFEGE-------LIIDEPACNACGACISVCPCNALVF 291
           +E C++C  C  +CPA AI +E     +         ID   C  CG C   CP +++V 
Sbjct: 76  EERCIACKLCEAVCPAMAITIESDVRADGSRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 135

Query: 292 PQP-EKQGDKVPNVVVNQDVCILCG 315
               E  G+K  ++   +++ +  G
Sbjct: 136 THVFEYHGEKRGDLYFTKEMLLAVG 160



 Score = 35.8 bits (81), Expect = 8e-07
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 69  EKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQC 128
           E+C+ C +C   CP  A+ +  + +         +     +++ +KC+ C  CE  CP  
Sbjct: 77  ERCIACKLCEAVCPAMAITIESDVR-----ADGSRRTTRYDIDLTKCIFCGFCEESCPVD 131

Query: 129 AIDVEREVPERKSLVLGEITIKKDDCVLCG 158
           +I VE  V E      G++   K+  +  G
Sbjct: 132 SI-VETHVFEYHGEKRGDLYFTKEMLLAVG 160



 Score = 24.3 bits (51), Expect = 0.003
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 308 QDVCILCGACTHSCPVDALTVK 329
           ++ CI C  C   CP  A+T++
Sbjct: 76  EERCIACKLCEAVCPAMAITIE 97