Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 180 a.a., NADH-quinone oxidoreductase, chain I from Enterobacter asburiae PDN3

 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 66  DISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVC 125
           D SE+CV C +CA ACP   +  S+      +   YP+  R   +N S+C+ C  CE  C
Sbjct: 55  DGSERCVACNLCAVACPVGCI--SLQKAETVDGRWYPEFFR---INFSRCIFCGLCEEAC 109

Query: 126 PQCAIDV--EREVPERKSLVLGEITIKKDDCVLCG 158
           P  AI +  + E+ E K     ++  +K+D ++ G
Sbjct: 110 PTTAIQLTPDFELGEYKR---QDLVYEKEDLLISG 141



 Score = 43.9 bits (102), Expect = 3e-09
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 114 KCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIP 173
           +CV C  C + CP   I +++              I    C+ CG+C E CP  AI+L P
Sbjct: 59  RCVACNLCAVACPVGCISLQKAETVDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTP 118

Query: 174 N 174
           +
Sbjct: 119 D 119



 Score = 43.5 bits (101), Expect = 4e-09
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 145 GEITIKKDD-----CVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKV 199
           G I + +D      CV C +CA  CP   I L   +       P    +I+   C++C +
Sbjct: 46  GRIVLTRDPDGSERCVACNLCAVACPVGCISLQKAETVDGRWYP-EFFRINFSRCIFCGL 104

Query: 200 CEKACPHNAIE 210
           CE+ACP  AI+
Sbjct: 105 CEEACPTTAIQ 115



 Score = 38.9 bits (89), Expect = 1e-07
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 32  CVGCGICSEICPTSAIEMGPLGAI-FKGDIDAPKLDISEKCVLCGMCACACPFDAVKLSI 90
           CV C +C+  CP   I +     +  +   +  +++ S +C+ CG+C  ACP  A++L+ 
Sbjct: 60  CVACNLCAVACPVGCISLQKAETVDGRWYPEFFRINFS-RCIFCGLCEEACPTTAIQLT- 117

Query: 91  NDKPITEMPQYPK 103
              P  E+ +Y +
Sbjct: 118 ---PDFELGEYKR 127



 Score = 38.5 bits (88), Expect = 1e-07
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 192 DACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANI 251
           + CV C +C  ACP   I     K         PE +        I+   C+ CG C   
Sbjct: 58  ERCVACNLCAVACPVGCISL--QKAETVDGRWYPEFF-------RINFSRCIFCGLCEEA 108

Query: 252 CPADAIEVEKPFE 264
           CP  AI++   FE
Sbjct: 109 CPTTAIQLTPDFE 121



 Score = 37.4 bits (85), Expect = 3e-07
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 253 PADAIEVEKPFEGELIIDEPA-----CNACGACISVCPCNALVFPQPEK-QGDKVPNVV- 305
           P + + +   + G +++         C AC  C   CP   +   + E   G   P    
Sbjct: 34  PEEPVYLPPRYRGRIVLTRDPDGSERCVACNLCAVACPVGCISLQKAETVDGRWYPEFFR 93

Query: 306 VNQDVCILCGACTHSCPVDAL 326
           +N   CI CG C  +CP  A+
Sbjct: 94  INFSRCIFCGLCEEACPTTAI 114



 Score = 35.8 bits (81), Expect = 8e-07
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 32  CVGCGICSEICPTSAIEMGP---LGAIFKGDIDAPKLDI 67
           C+ CG+C E CPT+AI++ P   LG   + D+   K D+
Sbjct: 99  CIFCGLCEEACPTTAIQLTPDFELGEYKRQDLVYEKEDL 137



 Score = 25.0 bits (53), Expect = 0.001
 Identities = 6/22 (27%), Positives = 14/22 (63%)

Query: 311 CILCGACTHSCPVDALTVKRTK 332
           C+ C  C  +CPV  +++++ +
Sbjct: 60  CVACNLCAVACPVGCISLQKAE 81