Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 180 a.a., NADH-quinone oxidoreductase subunit NuoI from Dickeya dianthicola ME23

 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 66  DISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVC 125
           D  E+CV C +CA ACP   +  S+    + +   YP+  R   +N S+C+ C  CE  C
Sbjct: 55  DGQERCVACNLCAVACPVGCI--SLQKAEMKDGRWYPEFFR---INFSRCIFCGMCEEAC 109

Query: 126 PQCAIDVEREVPERKSLVLGEITIKKDDCVLCG 158
           P  AI +  +  E       ++  +K+D ++ G
Sbjct: 110 PTTAIQLTPDF-EMGEFKRQDLVYEKEDLLISG 141



 Score = 47.0 bits (110), Expect = 4e-10
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 145 GEITIKKDD-----CVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKV 199
           G I + +D      CV C +CA  CP   I L   +M      P    +I+   C++C +
Sbjct: 46  GRIVLTRDPDGQERCVACNLCAVACPVGCISLQKAEMKDGRWYP-EFFRINFSRCIFCGM 104

Query: 200 CEKACPHNAIE 210
           CE+ACP  AI+
Sbjct: 105 CEEACPTTAIQ 115



 Score = 46.2 bits (108), Expect = 6e-10
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 112 QSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIEL 171
           Q +CV C  C + CP   I +++   +          I    C+ CG+C E CP  AI+L
Sbjct: 57  QERCVACNLCAVACPVGCISLQKAEMKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQL 116

Query: 172 IPN 174
            P+
Sbjct: 117 TPD 119



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 253 PADAIEVEKPFEGELIID-----EPACNACGACISVCPCNALVFPQPE-KQGDKVPNVV- 305
           P + +     F G +++      +  C AC  C   CP   +   + E K G   P    
Sbjct: 34  PEEPVNPPPRFRGRIVLTRDPDGQERCVACNLCAVACPVGCISLQKAEMKDGRWYPEFFR 93

Query: 306 VNQDVCILCGACTHSCPVDAL 326
           +N   CI CG C  +CP  A+
Sbjct: 94  INFSRCIFCGMCEEACPTTAI 114



 Score = 39.7 bits (91), Expect = 6e-08
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 192 DACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANI 251
           + CV C +C  ACP   I     K  +      PE +        I+   C+ CG C   
Sbjct: 58  ERCVACNLCAVACPVGCISL--QKAEMKDGRWYPEFF-------RINFSRCIFCGMCEEA 108

Query: 252 CPADAIEVEKPFE 264
           CP  AI++   FE
Sbjct: 109 CPTTAIQLTPDFE 121



 Score = 39.7 bits (91), Expect = 6e-08
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 10/75 (13%)

Query: 32  CVGCGICSEICPTSAIEMGPLGAIFKGDIDAP---KLDISEKCVLCGMCACACPFDAVKL 88
           CV C +C+  CP   I +    A  K     P   +++ S +C+ CGMC  ACP  A++L
Sbjct: 60  CVACNLCAVACPVGCISLQK--AEMKDGRWYPEFFRINFS-RCIFCGMCEEACPTTAIQL 116

Query: 89  SINDKPITEMPQYPK 103
           +    P  EM ++ +
Sbjct: 117 T----PDFEMGEFKR 127



 Score = 37.0 bits (84), Expect = 4e-07
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 239 KELCVSCGWCANICPADAIEVEKP-------FEGELIIDEPACNACGACISVCPCNALVF 291
           +E CV+C  CA  CP   I ++K        +     I+   C  CG C   CP  A+  
Sbjct: 57  QERCVACNLCAVACPVGCISLQKAEMKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQL 116

Query: 292 PQPEKQGD-KVPNVVVNQDVCILCG 315
               + G+ K  ++V  ++  ++ G
Sbjct: 117 TPDFEMGEFKRQDLVYEKEDLLISG 141



 Score = 35.0 bits (79), Expect = 1e-06
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 32  CVGCGICSEICPTSAIEMGP---LGAIFKGDIDAPKLDI 67
           C+ CG+C E CPT+AI++ P   +G   + D+   K D+
Sbjct: 99  CIFCGMCEEACPTTAIQLTPDFEMGEFKRQDLVYEKEDL 137



 Score = 26.9 bits (58), Expect = 4e-04
 Identities = 7/26 (26%), Positives = 17/26 (65%)

Query: 308 QDVCILCGACTHSCPVDALTVKRTKI 333
           Q+ C+ C  C  +CPV  +++++ ++
Sbjct: 57  QERCVACNLCAVACPVGCISLQKAEM 82