Pairwise Alignments

Query, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 166 a.a., periplasmic nitrate reductase, ferredoxin-like protein from Agrobacterium fabrum C58

 Score = 62.8 bits (151), Expect = 6e-15
 Identities = 47/149 (31%), Positives = 59/149 (39%), Gaps = 28/149 (18%)

Query: 190 DLDACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCA 249
           DL AC  C  C +ACP   I  +                G +    N     C  CG CA
Sbjct: 32  DLAACSGCAKCVEACPTGIITMV----------------GGLPS-VNFSAGECTFCGKCA 74

Query: 250 NICPADAIEVEKP--FEGELIIDEPACNA-----CGACISVCPCNALVFPQPEKQGDKVP 302
             CP           F+  + I E  C A     C AC   CP  A+ F +P + G  VP
Sbjct: 75  QACPEPVFATPDAHSFDHVMAIGE-GCLAFGNVDCQACRDACPTEAIRF-RPRRGGPFVP 132

Query: 303 NVVVNQDVCILCGACTHSCPVDALTVKRT 331
            +V  +D C  CGAC   CPV  + +K T
Sbjct: 133 ALV--EDACTGCGACVSVCPVGVIKIKET 159



 Score = 56.6 bits (135), Expect = 4e-13
 Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 23/147 (15%)

Query: 154 CVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIEAIC 213
           C  C  C E CP   I ++           +  +      C +C  C +ACP        
Sbjct: 36  CSGCAKCVEACPTGIITMVGG---------LPSVNFSAGECTFCGKCAQACPEPV----- 81

Query: 214 YKCPLASKIKKPELYGE-IKGQTNIDKELCVSCGWCANICPADAIEVEKPFEGELI--ID 270
           +  P A         GE      N+D      C  C + CP +AI       G  +  + 
Sbjct: 82  FATPDAHSFDHVMAIGEGCLAFGNVD------CQACRDACPTEAIRFRPRRGGPFVPALV 135

Query: 271 EPACNACGACISVCPCNALVFPQPEKQ 297
           E AC  CGAC+SVCP   +   +  ++
Sbjct: 136 EDACTGCGACVSVCPVGVIKIKETARE 162



 Score = 53.9 bits (128), Expect = 3e-12
 Identities = 43/150 (28%), Positives = 59/150 (39%), Gaps = 31/150 (20%)

Query: 28  DDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISE-KCVLCGMCACACPFDAV 86
           D   C GC  C E CPT  I M  +G +       P ++ S  +C  CG CA ACP    
Sbjct: 32  DLAACSGCAKCVEACPTGIITM--VGGL-------PSVNFSAGECTFCGKCAQACP---- 78

Query: 87  KLSINDKPITEMPQYPKIKRGIELNQSKC-----VLCEQCELVCPQCAIDVEREVPERKS 141
                 +P+   P        + + +  C     V C+ C   CP  AI   R  P R  
Sbjct: 79  ------EPVFATPDAHSFDHVMAIGEG-CLAFGNVDCQACRDACPTEAI---RFRPRRGG 128

Query: 142 LVLGEITIKKDDCVLCGICAEYCPADAIEL 171
             +  +   +D C  CG C   CP   I++
Sbjct: 129 PFVPALV--EDACTGCGACVSVCPVGVIKI 156



 Score = 38.1 bits (87), Expect = 2e-07
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 265 GELIIDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHSCP 322
           G  + D  AC+ C  C+  CP   +           +P+V  +   C  CG C  +CP
Sbjct: 27  GVALSDLAACSGCAKCVEACPTGIITMV------GGLPSVNFSAGECTFCGKCAQACP 78