Pairwise Alignments

Query, 254 a.a., transporter substrate-binding domain-containing protein from Methanococcus maripaludis S2

Subject, 275 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 80.9 bits (198), Expect = 3e-20
 Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 9/228 (3%)

Query: 31  KRGTLTVGVCAQYPPTIY--EENGNLAGFDFDLMNEIAKRMNLNTDFKIYNSKSELFDAL 88
           K+G L VGV     P  +   +   + G++ DL+N IAK++ +    K     + + + L
Sbjct: 31  KKGELVVGVLGTDEPATFIDPKTRQIVGYEVDLVNAIAKKIGVKPVLKQIAVAARIPE-L 89

Query: 89  EKNEVDCIGSR-TVNYERRKFVDFTRVYYYDSVRVAVPESSSVTLLKELKGKNLGVIEGS 147
           ++  VD + +  T N ER   +DF+   +    +  V + S +T + +L GK +  I G 
Sbjct: 90  QQGHVDLVAAGLTHNKEREAQIDFSLTTFVTGQKAIVKKDSGITEVPQLAGKKVLTIRGG 149

Query: 148 VSSELVESYLTNIGCKCLYYDTPENLTNAVENGEVDAVIGHEMYLEHISTKCNVQKRY-- 205
                +   + N+    + +DT +    A++ G+    +  E  L     K   QK    
Sbjct: 150 TQEPNIRKAVPNVDV--VTFDTSQQAFQALQQGKGVGYVDDEAALLRSYAKLGPQKAQYV 207

Query: 206 -LDEKLSVSYWAIPINKNNPNLRNSINDILLEMENDGTLDELKLKWYG 252
            L + LS    AI I K    L+  ++D L E+E  G  +++ +KWYG
Sbjct: 208 VLKQNLSTEALAIGIKKGETALKAVVDDTLRELEKSGEAEKIFIKWYG 255