Pairwise Alignments

Query, 254 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 250 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 79.3 bits (194), Expect = 7e-20
 Identities = 54/218 (24%), Positives = 107/218 (49%), Gaps = 5/218 (2%)

Query: 38  LTVGITPEMPPQQYYEDGELKGFDIDLMKEIANNMGLKPEFKIYEYGGAHEALLNGEID- 96
           L V      PP ++ E+G+  GFD++L++ I   +G K E+   ++ G    L++   D 
Sbjct: 31  LRVATDATFPPMEFVENGKRTGFDVELVEAIGKTLGRKIEWIDIDFKGLVPGLISKRFDM 90

Query: 97  CLPSMTISPERKEDMDFSRAYIQTYVVVAVFE-NSPYRELKDLNGKNIAVVTNTYTEDWA 155
            +  + I+ ERK+ +DF+  Y    +VV V + N+  +   D+NGK ++V   T +  + 
Sbjct: 91  AVSGIYITDERKKVVDFTVPYYAGGLVVMVKDGNTAIKTPADINGKKVSVQVGTKSVSYT 150

Query: 156 KEYLGSLNANIKSYDSVEGLVSDVYSGNIDAVVTDQIQLDYYSKQNNFESRLIFEKMTIE 215
           KE    +   +   +  + + + V  G  DA VT +     Y +      +++ E++T E
Sbjct: 151 KEKFPQV--QLMEVEKNQEMFNLVDIGRADAAVTGKPAAYQYVRTRG-GLKVLPEQITTE 207

Query: 216 YWAIAVKKDNHNLQNEINDVLFELDENKALYELKNKWY 253
            + +A++KD   L   +N  + +L  +    ++  KW+
Sbjct: 208 EYGMAIRKDTPELTKAVNGAIEKLKADGTYDQIVKKWF 245