Pairwise Alignments

Query, 349 a.a., hydroxymethylglutaryl-CoA synthase from Methanococcus maripaludis S2

Subject, 493 a.a., Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) / conserved protein associated with acetyl-CoA C-acyltransferase from Variovorax sp. SCN45

 Score = 56.2 bits (134), Expect = 2e-12
 Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 8/252 (3%)

Query: 3   EVGIVGYGSDLPKYRIKAEDIAGAWGKDAQAIKRGLVVNEKSVPGPDEDTATIAVQSARR 62
           E G++     +P+ R++  D+       A  +K  L    +++   DED+ T+A+++AR+
Sbjct: 7   EFGLLATTRYVPRLRLERGDVLAQHRWMAPGLKT-LAKGRRAMANWDEDSVTMAIEAARQ 65

Query: 63  ALSRAGINPKDIGAVYVGSESHPYAVKPTSGIVAEACGVSPDFTAADLEFACKAGTAGIQ 122
              RA      +  + + S + P+A +  +GIVA A GV+PD    D   + +A    + 
Sbjct: 66  L--RAASPDAAVAELTLASTTLPFAERLNAGIVASALGVAPDAVLRDTASSPRAALTELS 123

Query: 123 MCMGLVGSEMMEYAMAVGADTAQGAPGDALEYTAAAGGAAFIIGAKKEEFIAKFNGTYSY 182
             +    +   +  M + ++     P    E     G A  ++G      IA    + S 
Sbjct: 124 AALRRPANTAAQ--MLLASERRIARPASTQEMIFGDGAAGALVGNGSP--IATLVASAST 179

Query: 183 TTDTPDFWRREHE-HYPKHGGRFTGEPAYFKHVLNGAKGMMEKMGTTSKDYDYCVFHQPN 241
             D  D +R+  E H      R+  +  Y K  +   +  ++  G ++ D        P 
Sbjct: 180 HADLVDHFRQAGEDHEYGWEERWVRDEGYMKIAVATLRQCLKDGGVSAGDIGQFAMPAPL 239

Query: 242 GKFYLTAAKKLG 253
            +     AKKLG
Sbjct: 240 ARINDAVAKKLG 251