Pairwise Alignments

Query, 284 a.a., winged helix-turn-helix transcriptional regulator from Methanococcus maripaludis S2

Subject, 238 a.a., Repressor protein PhoU from Alteromonas macleodii MIT1002

 Score = 60.8 bits (146), Expect = 3e-14
 Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 7/184 (3%)

Query: 85  MGTNVIQNIDNVFDSLKTHDLDIAKSIILEDYALNRMEDEVN----LVIKMKASKYMDMN 140
           MG  V Q + +   ++K +   +A+ ++L D  +N ME +++     +I  +     D+ 
Sbjct: 28  MGGEVEQQLVDTLKAVKHNHAALAEKVVLNDLKINSMEIQIDEECLRIIAKRHPTASDLR 87

Query: 141 SLMQVSNIAANIERCGDYLSNIAEEVV-NGLLVDPTINKEVFEIKEIISKMFTHAMNMV- 198
            +M +S    +IER GD +  IA+ V  N L    TI   +  I E ++ M     +   
Sbjct: 88  LIMTISKAITDIERMGDEIERIAKLVTRNKLPSSDTIKSSMLLIGERVAAMMRGTFDAFA 147

Query: 199 -KSKTIETEIYELEGNLHKKLDTIMEKIAEHPDENLKDINQFIQFGMFLKDVERFGDRCL 257
            + +    E+Y+ +  +  +   ++        ++  D+  ++     ++ +ER GDRC 
Sbjct: 148 RQDEAAALEVYDQDNRIDSEYKRLLSYTTSEMQKSTDDMQDWLDVLWAMRSLERIGDRCK 207

Query: 258 KIFE 261
            + E
Sbjct: 208 NVCE 211



 Score = 28.9 bits (63), Expect = 1e-04
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 85  MGTNVIQNIDNVFDSLKTHDLDIAKSIILEDYALNRMEDEVNLVIKMKASKYM----DMN 140
           +G  V   +   FD+    D   A  +  +D   NR++ E   ++    S+      DM 
Sbjct: 131 IGERVAAMMRGTFDAFARQDEAAALEVYDQD---NRIDSEYKRLLSYTTSEMQKSTDDMQ 187

Query: 141 SLMQVSNIAANIERCGDYLSNIAEEVV 167
             + V     ++ER GD   N+ E VV
Sbjct: 188 DWLDVLWAMRSLERIGDRCKNVCEYVV 214