Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 296 a.a., Putative aliphatic sulfonates transport permease protein SsuC from Xanthobacter sp. DMC5

 Score =  144 bits (362), Expect = 3e-39
 Identities = 78/242 (32%), Positives = 137/242 (56%), Gaps = 6/242 (2%)

Query: 9   LPIIGILAWEALA-IYLNNPVILPKVESVISILLNPGVGILGTGNLIENTIVSIKRVLIG 67
           +P + +  W+A + + L  P +LP    +I+        ++ TG L      S+ R L G
Sbjct: 54  VPALLLAVWQASSNLGLVAPEVLPSPAEIIAAYAE----LIRTGELQAAIPASLARALTG 109

Query: 68  FFIAGAFAIPLGLLMGYYSLINDLFDTTVELLRPIPPLAWVPLALAWFGIGESSMHFIIF 127
             +  +  + LGL  G + +  +LFD  +++LR IP +A +PL + WFGIGE +   +IF
Sbjct: 110 LALGASVGLVLGLFAGLWRVGEELFDAPLQMLRTIPFIAMIPLFIIWFGIGEQAKIALIF 169

Query: 128 IGAFFPILINTISGVKSVPVIMIEAAKTLGGSTKDILKSVVVPASSPDILTGLRVGAGIA 187
               FP+ +NT SGV+ V   +IEAA+  G S   I   V++P + P IL GLR  AG++
Sbjct: 170 GATIFPVYLNTYSGVRGVDQKLIEAARVFGLSHGRIATRVIIPTALPSILVGLRFAAGVS 229

Query: 188 WMCVVAAEMLPGSDAGLGYLIMYAYSLSKMNIVVASMIIIGIIGIILDKGLRYIEKKYFC 247
            + +VAAE +  + +G+G++++ A    + +I++A +I+  ++GI +D  +R +E+    
Sbjct: 230 LLALVAAEQI-NARSGIGFILINANQNQRTDIIIAGIIVYALLGIAIDLVMRVVERLALP 288

Query: 248 WK 249
           W+
Sbjct: 289 WR 290