Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 283 a.a., Putative aliphatic sulfonates transport permease protein SsuC from Xanthobacter sp. DMC5

 Score =  143 bits (360), Expect = 4e-39
 Identities = 85/251 (33%), Positives = 135/251 (53%), Gaps = 9/251 (3%)

Query: 4   LKNLT---LPIIGILAWEALAIYL-NNPVILPKVESVISILLNPGVGILGTGNLIENTIV 59
           L NLT   LP I ++ W+  A Y   +PV LP   +V++        +L    L  + + 
Sbjct: 34  LPNLTGFILPFIILVLWQTAATYKWIDPVFLPAPLTVVTAFWK----MLTKQKLAFDFLA 89

Query: 60  SIKRVLIGFFIAGAFAIPLGLLMGYYSLINDLFDTTVELLRPIPPLAWVPLALAWFGIGE 119
           SI  V   F    A A+ LG+  G    + + F  T + +R IP +AW+PL + W GIG 
Sbjct: 90  SINIVGQAFIYGSAAALLLGIAAGLSRKVEEFFGPTFDTIRHIPGIAWLPLIVLWLGIGA 149

Query: 120 SSMHFIIFIGAFFPILINTISGVKSVPVIMIEAAKTLGGSTKDILKSVVVPASSPDILTG 179
            +   +I    FFP+ +NT+ G+++V    IE AK L  +   +++ V++PA+ P I+  
Sbjct: 150 PAKILVIAKSVFFPVFLNTLQGIRNVEKNYIELAKVLTLTRWQLIRKVILPAAMPSIMVS 209

Query: 180 LRVGAGIAWMCVVAAEMLPGSDAGLGYLIMYAYSLSKMNIVVASMIIIGIIGIILDKGLR 239
           LR  AG+AW  VV AE L G + GLG+LI  A  L   + ++  M+IIG++G  +D+ + 
Sbjct: 210 LRYAAGLAWALVVVAEGLSGLE-GLGFLIFRAQGLLLTDQLLVCMVIIGLVGFAIDRSMF 268

Query: 240 YIEKKYFCWKK 250
             +K+   WK+
Sbjct: 269 LAQKRVLKWKQ 279