Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 260 a.a., Bicarbonate transport system permease protein CmpB from Xanthobacter sp. DMC5

 Score =  150 bits (380), Expect = 2e-41
 Identities = 82/218 (37%), Positives = 126/218 (57%), Gaps = 5/218 (2%)

Query: 27  PVILPKVESVISILLNPGVGILGTGNLIENTIVSIKRVLIGFFIAGAFAIPLGLLMGYYS 86
           P  L   E ++++L     G    G L ++   S++R   G+ +A A  +PLGLLMG + 
Sbjct: 40  PGPLEVAERLVTLLHTSFAG----GTLPQHLASSLQRFSAGYLLAAAVGVPLGLLMGRFR 95

Query: 87  LINDLFDTTVELLRPIPPLAWVPLALAWFGIGESSMHFIIFIGAFFPILINTISGVKSVP 146
           L++D+     + LR I P+AWVP A  WFG G      IIF GAF P L+N   G + V 
Sbjct: 96  LLDDIVSPLFDALRFIAPIAWVPFAALWFGTGFGGPVLIIFSGAFPPCLLNAYRGARQVD 155

Query: 147 VIMIEAAKTLGGSTKDILKSVVVPASSPDILTGLRVGAGIAWMCVVAAEMLPGSDAGLGY 206
              IEAA+ LG  T  ++  V++PA++P I+ GLR+GAG+ W  +V AE++  S  G+GY
Sbjct: 156 PRYIEAAEMLGTPTHRLILEVLLPAATPSIVAGLRIGAGLGWQSLVGAELIVAS-TGVGY 214

Query: 207 LIMYAYSLSKMNIVVASMIIIGIIGIILDKGLRYIEKK 244
           +++ A S      V+  M  IG++G+++D  LR +E +
Sbjct: 215 MMVQAQSGVATATVMVGMAAIGLVGVLIDIALRALEAR 252