Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 297 a.a., Bicarbonate transport system permease protein CmpB from Xanthobacter sp. DMC5

 Score =  135 bits (341), Expect = 7e-37
 Identities = 66/179 (36%), Positives = 114/179 (63%), Gaps = 1/179 (0%)

Query: 58  IVSIKRVLIGFFIAGAFAIPLGLLMGYYSLINDLFDTTVELLRPIPPLAWVPLALAWFGI 117
           +VS++RV +GF +A    I LG ++G         D   ++LR +PPLAW+P+ALA F  
Sbjct: 104 LVSLQRVAVGFGLAAVAGIALGAVVGQSVWAMRGLDPIFQVLRTVPPLAWLPIALAAFRD 163

Query: 118 GESSMHFIIFIGAFFPILINTISGVKSVPVIMIEAAKTLGGSTKDILKSVVVPASSPDIL 177
              S  F+IFI A +PI+INT  G++++P      A+ L  +  +    +++P+++P I 
Sbjct: 164 SNPSAIFVIFITAIWPIIINTAVGIRNIPQDYRNVAQVLRLNPLEFFWKIMLPSAAPYIF 223

Query: 178 TGLRVGAGIAWMCVVAAEMLPGSDAGLGYLIMYAYSLSKMNIVVASMIIIGIIGIILDK 236
           TGLR+G G++W+ +VAAEML G   G+G+ I  A++ S++  ++ +++ IG++G +LD+
Sbjct: 224 TGLRIGIGLSWLAIVAAEMLTGG-VGIGFFIWDAWNSSRLPDIIVALVYIGLVGFVLDR 281