Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 262 a.a., alkanesulfonate transporter permease subunit from Pseudomonas simiae WCS417

 Score =  142 bits (357), Expect = 9e-39
 Identities = 72/241 (29%), Positives = 138/241 (57%), Gaps = 6/241 (2%)

Query: 9   LPIIGILAWE-ALAIYLNNPVILPKVESVISILLNPGVGILGTGNLIENTIVSIKRVLIG 67
           LP++ ++ W+ +++    +  ILP   +VI      G+ ++ +G +  +  +S  R  +G
Sbjct: 15  LPVLLLVVWQLSVSAGWLSTRILPAPSAVIEA----GINLVASGEIWTHLAISGWRAGLG 70

Query: 68  FFIAGAFAIPLGLLMGYYSLINDLFDTTVELLRPIPPLAWVPLALAWFGIGESSMHFIIF 127
           F I G+  + LG + G       L D++V+++R +P LA +PL + WFGI E++  F++ 
Sbjct: 71  FLIGGSIGLALGFITGLSKWGERLLDSSVQMIRNVPHLALIPLVILWFGIDETAKIFLVA 130

Query: 128 IGAFFPILINTISGVKSVPVIMIEAAKTLGGSTKDILKSVVVPASSPDILTGLRVGAGIA 187
           +G  FPI +NT  G+++V   ++E +++ G S   + + V++P + P IL G+R   G  
Sbjct: 131 LGTLFPIYLNTYHGIRNVDPALVEMSRSYGLSGFSLFRQVILPGALPSILVGVRFALGFM 190

Query: 188 WMCVVAAEMLPGSDAGLGYLIMYAYSLSKMNIVVASMIIIGIIGIILDKGLRYIEKKYFC 247
           W+ ++ AE +  S AG+GYL M A    + ++VV ++++  I+G + D   R +E+ +  
Sbjct: 191 WLTLIVAETISAS-AGIGYLAMNAREFLQTDVVVLAIVMYAILGKLADLAARGLERVWLR 249

Query: 248 W 248
           W
Sbjct: 250 W 250