Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 263 a.a., aliphatic sulfonate ABC transporter permease SsuC from Escherichia coli ECRC98

 Score =  140 bits (353), Expect = 3e-38
 Identities = 75/241 (31%), Positives = 137/241 (56%), Gaps = 6/241 (2%)

Query: 9   LPIIGILAWE-ALAIYLNNPVILPKVESVISILLNPGVGILGTGNLIENTIVSIKRVLIG 67
           LP+  +  W+ A ++   +  ILP  E V+         +  +G L ++  +S  R LIG
Sbjct: 17  LPVGIVTVWQLASSVGWLSTRILPSPEGVVMAFWT----LSASGELWQHLAISSWRALIG 72

Query: 68  FFIAGAFAIPLGLLMGYYSLINDLFDTTVELLRPIPPLAWVPLALAWFGIGESSMHFIIF 127
           F I G+  + LGL+ G       L DT++++LR +P LA +PL + WFGI ES+  F++ 
Sbjct: 73  FSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVA 132

Query: 128 IGAFFPILINTISGVKSVPVIMIEAAKTLGGSTKDILKSVVVPASSPDILTGLRVGAGIA 187
           +G  FPI INT  G++++   ++E A++ G S   +   V++P + P I+ G+R   G+ 
Sbjct: 133 LGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLM 192

Query: 188 WMCVVAAEMLPGSDAGLGYLIMYAYSLSKMNIVVASMIIIGIIGIILDKGLRYIEKKYFC 247
           W+ ++ AE +  +++G+GYL M A    + ++VV ++I+  ++G + D   + +E+ +  
Sbjct: 193 WLTLIVAETI-SANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLWLR 251

Query: 248 W 248
           W
Sbjct: 252 W 252