Pairwise Alignments

Query, 692 a.a., ATP-dependent protease LonB from Methanococcus maripaludis S2

Subject, 784 a.a., DNA-binding ATP-dependent protease La (NCBI) from Escherichia coli BW25113

 Score = 80.9 bits (198), Expect = 2e-19
 Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 22/212 (10%)

Query: 483 DYLKNFKRYKNIVSNDKPKIGVIHGLAVLGADGLGDVTKIITKIVKSKHPRTNLLNISGD 542
           DYL   +R+    ++++ ++G + GLA     G  D+  I T  V  K   T   ++ G+
Sbjct: 577 DYL-GVQRFDYGRADNENRVGQVTGLAWTEVGG--DLLTIETACVPGKGKLTYTGSL-GE 632

Query: 543 LAKHSITLASALSKKLVSDGTLSIAKAKGEVAKEDLDLAE-HEIYIQFSQSYSKIDGDSA 601
           + + SI  A            L++ +A+ E    + D  E  +I++   +  +  DG SA
Sbjct: 633 VMQESIQAA------------LTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSA 680

Query: 602 TAAACLSIISSLLNIPLKQDFCITGSLDLNGEILAIGGVNEKINAAKEYGFKRVIIPQSN 661
             A C +++S L   P++ D  +TG + L G++L IGG+ EK+ AA   G K V+IP  N
Sbjct: 681 GIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFEN 740

Query: 662 FEDVID-PEGI----EVIPVTRLEEIIPLAFE 688
             D+ + P+ +    ++ PV R+EE++ LA +
Sbjct: 741 KRDLEEIPDNVIADLDIHPVKRIEEVLTLALQ 772



 Score = 27.3 bits (59), Expect = 0.003
 Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 27/198 (13%)

Query: 221 IGTPPHKRVIIGAIHEAHKGILYVDEIKTMPVDVQDYILTALQDKQLAISGRNPNSSGAS 280
           IG+ P K +   A       +  +DEI  M  D++    +AL +  +    +N   S   
Sbjct: 399 IGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLE--VLDPEQNVAFSDHY 456

Query: 281 VETNPIPCDLTLIMSGNMDDASNLRAPLLDRIDYKVVLKNKMDNNQENRDKLLQFIVQEL 340
           +E   +  DL+ +M     ++ N+ APLLDR++  + L    ++ + N  K    + +++
Sbjct: 457 LE---VDYDLSDVMFVATSNSMNIPAPLLDRMEV-IRLSGYTEDEKLNIAK-RHLLPKQI 511

Query: 341 ENNNLRPMSYEACCEIVRMAQLLSGSKNKLTLRLRQLSNIIKMANDIATGKELSESIEEM 400
           E N L+                    K +LT+    +  II+     A  + L   I ++
Sbjct: 512 ERNALK--------------------KGELTVDDSAIIGIIRYYTREAGVRGLEREISKL 551

Query: 401 SEKEVKPEVTVKAVKPAE 418
             K VK  +  K++K  E
Sbjct: 552 CRKAVKQLLLDKSLKHIE 569