Pairwise Alignments

Query, 248 a.a., ABC transporter ATP-binding protein from Methanococcus maripaludis S2

Subject, 241 a.a., Lipopolysaccharide export system ATP-binding protein LptB from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score = 95.9 bits (237), Expect = 7e-25
 Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 20/242 (8%)

Query: 2   LQIEDLSVKVGDKEILKDIHLYIEKGESHVLFGPNGAGKSTLLNTILGNPKYEVVRGNIY 61
           L  ++L+     + +++D+ L +  GE   L GPNGAGK+T    ++G    +   GNI 
Sbjct: 4   LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA--GNII 61

Query: 62  FKGKDITDMPMHERAQLGIGISYQSPPAISGVRLETMINAI--------SKRSDEEMEEM 113
               DI+ +P+H RA+ GIG   Q       + +   + A+        +++ ++   E+
Sbjct: 62  IDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANEL 121

Query: 114 AKRLNIRHFYQRDLNVGFSGGEVKRSELLQIFAQNPDLVMFDEPDSGVDVENVELLGGII 173
            +  +I H  +  +    SGGE +R E+ +  A NP  ++ DEP +GVD  +V  +  II
Sbjct: 122 MEEFHIEHL-RDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII 180

Query: 174 NHLLDKDRKPSERNKSGLIITHLGYILNFMEVDKAHVLLDGVIACSGTPDEIL-NEIIKN 232
            HL D        +  G++IT           ++A+++  G +   GTP EIL +E +K 
Sbjct: 181 EHLRD--------SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKR 232

Query: 233 GY 234
            Y
Sbjct: 233 VY 234