Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 417 a.a., NADH-quinone oxidoreductase subunit D from Rhodanobacter sp000427505 FW510-R12

 Score =  104 bits (260), Expect = 4e-27
 Identities = 100/407 (24%), Positives = 173/407 (42%), Gaps = 51/407 (12%)

Query: 9   GPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGICS 68
           GP H       RL + ++ E +   +  +G+ HRG E+L E  P  ++    +++  +  
Sbjct: 12  GPQHPAAHGVLRLIMEMDGETIVRIDPHVGLLHRGTEKLAESKPFNQSIGYMDRLDYVSM 71

Query: 69  HIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRCF 128
             +  +  R +E    IE PERA +IR + +E+ R+ +H +  G     LG   + +  F
Sbjct: 72  MCNEHAYVRAIETLLGIEAPERAQYIRTMFDEITRILNHLMWIGSNALDLGAMAVMLYAF 131

Query: 129 MLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHI-------LDKISKYEEG- 180
             RE +M V+  +SG+R+H +    GG+        +Q           L +I+ + EG 
Sbjct: 132 REREELMDVYEAVSGARMHATYYRPGGVYRDLPAQMSQYRESPWHKGADLKRINSWREGS 191

Query: 181 LNKFLERMLND-PMII--------------SRVKDVGVMDRKTAAKFHAVGPTARGSNVK 225
           +  FL+    D P  +               R   +GV+  + A ++   G   RGS V+
Sbjct: 192 MLDFLDAFTADFPSKVDEYEVLLTTNRIWKQRTVGIGVVSPELAQQWGMTGAMLRGSGVE 251

Query: 226 SDMRKWGWVPEYDPYDFDEILFDSGDVFARLAVRFYECLESVKIIRQALDALKDTSDKRI 285
            D+RK     +Y   DFD  +  +GD + R  VR  E  +S +IIRQ ++ L+  +   +
Sbjct: 252 WDLRKKQPYAKYAEMDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCVEWLR-ANPGPV 310

Query: 286 YNPNYE----------------LHEFKPIN-----------CYTEAQRGEQYYSYGLDDE 318
              N++                +H FK              C  EA +GE       D  
Sbjct: 311 MVKNFKVAPPSRVEMKQDMEALIHHFKLFTEGYCVPAGETYCAVEAPKGEFGCYLVSDGA 370

Query: 319 GLVRQAKIRTPTATNLGAMEDIVKGYHVSDAELIIASCDPCFTCTDR 365
               +  +R P   +L +M+ +V G+ ++D   +I + D  F   DR
Sbjct: 371 NKPFRVHLRAPGFAHLSSMDTVVHGHMLADVVAMIGTYDLVFGEVDR 417