Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 401 a.a., NADH-quinone oxidoreductase subunit D from Xanthobacter sp. DMC5

 Score =  105 bits (261), Expect = 3e-27
 Identities = 105/392 (26%), Positives = 166/392 (42%), Gaps = 38/392 (9%)

Query: 5   EIAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKI- 63
           +I  GP H       RL L ++ E+V+  +  IG+ HRG E+L+E     +A    +++ 
Sbjct: 17  QINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEAKTYLQAVPYFDRLD 76

Query: 64  -CGICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHET 122
            C   +  H +  A  VE    IE+P+R   IR++  E+ RL SH L        +G  T
Sbjct: 77  YCAPMNQEHAYCLA--VEKLLGIEVPKRGQLIRVLYSEIGRLLSHLLNVTTFAMDVGALT 134

Query: 123 MSMRCFMLREPIMQVFFEISGSRVHYSCPIIGGIR---PRCNISETQIPHILDKISKYEE 179
             +  F  RE +M  +   SGSR+H +    GG+    PR  + +  I    D   K   
Sbjct: 135 PPLWGFEEREKLMIFYERASGSRMHAAYFRPGGVHQDLPRQLVED--IGAFCDPFLKLVA 192

Query: 180 GLNKFLERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDP 239
            L+     + N+ +   R  D+G++    A  +   GP  RGS    D+R+      Y  
Sbjct: 193 DLDAL---VTNNRIFKQRTVDIGIVSVDEALSWGFSGPVLRGSGAAWDLRRAQPYECYSE 249

Query: 240 YDFDEILFDSGDVFARLAVRFYECLESVKIIRQALDAL------KDTSDKRIYNPNYE-- 291
            DFD  +   GD + R  VR  E  +S  I++Q ++ L        T D ++  P     
Sbjct: 250 LDFDIPVGKHGDCYDRYLVRMEEMRQSTYIMKQCVERLLKETGPVHTQDHKVAPPKRAEM 309

Query: 292 -------LHEFK-----------PINCYTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATN 333
                  +H FK            +    EA +GE       D      + KIR P   +
Sbjct: 310 KRSMEALIHHFKLYTEGFHVPEGDVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGFAH 369

Query: 334 LGAMEDIVKGYHVSDAELIIASCDPCFTCTDR 365
           L AM+ + +G+ ++D   ++ S D  F   DR
Sbjct: 370 LQAMDFLNRGHMLADVSAVLGSLDIVFGEVDR 401