Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 594 a.a., NADH:ubiquinone oxidoreductase from Pseudomonas simiae WCS417

 Score = 91.3 bits (225), Expect = 6e-23
 Identities = 91/387 (23%), Positives = 162/387 (41%), Gaps = 36/387 (9%)

Query: 8   IGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGIC 67
           +GP H +     R+ L ++ E + D    IG +HRG E++ E           ++I  + 
Sbjct: 215 LGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTDRIDYLG 274

Query: 68  SHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRC 127
             ++       VE    I++P+R + IRI++ E  R+ SH L  G   + +G  T     
Sbjct: 275 GVMNNLPYVLSVEKLAGIKVPDRVDTIRIMMAEFFRITSHLLFLGTYIQDVGAMTPVFFT 334

Query: 128 FMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISK-----YEEGLN 182
           F  R+   +V   I+G R+H +   IGG+          +P+  D++ K       + L+
Sbjct: 335 FTDRQRAYKVIEAITGFRLHPAWYRIGGV-------AHDLPNGWDRLVKEFIDWMPKRLD 387

Query: 183 KFLERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDF 242
           ++ +  L++ ++  R   V   + K A ++   G   R +    D+RK      Y+ ++F
Sbjct: 388 EYQKAALDNSILKGRTIGVAQYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEF 447

Query: 243 DEILFDSGDVFARLAVRFYECLESVKIIRQA---LDALKDTSDKRIYNPNYELHEFKPIN 299
           +  L  +GD + R  VR  E  +S+KII Q    + A    +D  +  P  +    + I 
Sbjct: 448 EVPLAANGDAYDRCIVRVEEMRQSLKIIEQCMRNMPAGPYKADHPLTTPPPKERTLQHIE 507

Query: 300 C---------------------YTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAME 338
                                   EA +G   Y    D   +  + +IRTP+  +L  + 
Sbjct: 508 TLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSFAHLQQIP 567

Query: 339 DIVKGYHVSDAELIIASCDPCFTCTDR 365
            ++KG  V+D    + S D      DR
Sbjct: 568 SVIKGEMVADLIAYLGSIDFVMADVDR 594