Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 411 a.a., NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) from Sphingobium sp. HT1-2

 Score =  112 bits (280), Expect = 2e-29
 Identities = 101/393 (25%), Positives = 177/393 (45%), Gaps = 43/393 (10%)

Query: 6   IAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICG 65
           I  GP H       RL + ++ EIV+  +  +G+ HRG E+L+E     +A    +++  
Sbjct: 29  INFGPQHPAAHGVLRLVMELDGEIVERCDPHVGLLHRGTEKLIEHKTYMQALPYFDRL-D 87

Query: 66  ICSHIHL-WSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMS 124
            CS + +  S    VE   N+E+P RA ++R+   EL R+ +H L  G     +G  T +
Sbjct: 88  YCSPLGMEHSYVLAVEKLLNLEVPLRAQYLRVFFAELTRICNHMLNLGSHVMDVGAMTPN 147

Query: 125 MRCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKF 184
           +  F +RE  +  F   SG+R+H +    GG+          +P  L  ++   + L+  
Sbjct: 148 LWLFEIREDCLNFFERASGARMHSAYFRPGGV-------HQDVP--LKLLTDIADWLDTR 198

Query: 185 LERMLNDPMII--------SRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPE 236
           L R+  D M +         R  D+ ++ ++ A K+   GP  RGS +  D+RK      
Sbjct: 199 LPRLFEDAMSLVVDNRIFKQRNVDISIVSKEDALKWGFSGPMLRGSGIAWDIRKAQPYDV 258

Query: 237 YDPYDFDEILFDSGDVFARLAVRFYECLESVKIIRQALDALKD----TSDKRIYNPNYE- 291
           YD  +FD  +  + D + R  VR  E  +S +I++Q L  + +    + D+++  P    
Sbjct: 259 YDRMEFDVPVGTAFDCYDRFMVRVEEVRQSARIMKQCLSEMPEGPIASFDRKVSPPKRGE 318

Query: 292 --------LHEFK-----------PINCYTEAQRGEQYYSYGLDDEGLVRQAKIRTPTAT 332
                   +H FK            +   TE+ +GE       D      + KIR    +
Sbjct: 319 MKKSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVSDGSNKPYRCKIRPTAFS 378

Query: 333 NLGAMEDIVKGYHVSDAELIIASCDPCFTCTDR 365
           +L AM+ ++KG+ ++D   ++ + D  F   DR
Sbjct: 379 HLQAMDFMMKGHMLADTTAVLGAMDIVFGECDR 411