Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 593 a.a., NADH-quinone oxidoreductase subunit C/D from Pseudomonas putida KT2440

 Score = 92.4 bits (228), Expect = 3e-23
 Identities = 90/387 (23%), Positives = 160/387 (41%), Gaps = 36/387 (9%)

Query: 8   IGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGIC 67
           +GP H +     R+ L ++ E + D    IG +HRG E++ E           ++I  + 
Sbjct: 214 LGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTDRIDYLG 273

Query: 68  SHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRC 127
             ++       VE    I++P++ + IRI++ E  R+ SH L  G   + +G  T     
Sbjct: 274 GVMNNLPYVLAVEKLAGIKVPQKVDVIRIMLAEFFRITSHLLFLGTYIQDVGAMTPVFFT 333

Query: 128 FMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISK-----YEEGLN 182
           F  R+    V   I+G R+H +   IGG+          +P   DK+ K       + L+
Sbjct: 334 FTDRQRAYTVIEAITGFRLHPAWYRIGGVAH-------DLPRGWDKLVKDFVEWLPKRLD 386

Query: 183 KFLERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDF 242
           ++ +  L + ++  R   V   + K A ++   G   R +    D+RK      Y+ ++F
Sbjct: 387 EYTKAALQNSILKGRTIGVAAYNTKEALEWGTTGAGLRATGCNFDLRKARPYSGYENFEF 446

Query: 243 DEILFDSGDVFARLAVRFYECLESVKIIRQALDALKD---TSDKRIYNPNYELHEFKPIN 299
           +  L  +GD + R  VR  E  +S++II Q L  + +    +D  +  P  +    + I 
Sbjct: 447 EVPLAHNGDAYDRCMVRVEEMRQSIRIIDQCLRNMPEGPYKADHPLTTPPPKERTLQHIE 506

Query: 300 C---------------------YTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAME 338
                                   EA +G   Y    D   +  + +IRTP+  +L  + 
Sbjct: 507 TLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQQIP 566

Query: 339 DIVKGYHVSDAELIIASCDPCFTCTDR 365
            ++KG  V+D    + S D      DR
Sbjct: 567 SVIKGSMVADLIAYLGSIDFVMADVDR 593