Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 414 a.a., NADH dehydrogenase (quinone) subunit D from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  105 bits (261), Expect = 3e-27
 Identities = 96/376 (25%), Positives = 171/376 (45%), Gaps = 34/376 (9%)

Query: 8   IGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGIC 67
           +GP H       +  L ++ E + DA  TIG  HR  E++ E  P  +   L +++    
Sbjct: 35  LGPTHPATHGIFQNILQMDGEKIVDAVPTIGYIHRAFEKIAERRPFYQITPLTDRMNYCS 94

Query: 68  SHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRC 127
           S I+       VE    I +P+RA +IR+I+ EL R+  H +       ILG ++ +   
Sbjct: 95  SPINNMGYHMTVEKLLGITVPKRAQYIRVIMMELARISDHLI----CNSILGVDSGAFTG 150

Query: 128 FML----REPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNK 183
           F+     RE I  ++ E+ G+R+  +   IGG+    ++S   +  I + ++++ +   +
Sbjct: 151 FLYVMQEREHIYDIYEEVCGARLTTNMGRIGGMER--DLSPKALHLIGEFLNRFPKVWAE 208

Query: 184 FLERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFD 243
           F + M  + + + R   VG +  + A  +   GP  R + V  D+R       Y+ ++F+
Sbjct: 209 FEKMMTRNRIFMDRTTGVGAISAERALNYGFTGPNLRAAGVDYDVRVMNPYSSYEDFEFE 268

Query: 244 EILFDSGDVFARLAVRFYECLESVKIIRQALDALKDTS------------DKRIY-NPNY 290
             +  +GD + R  VR  E  +S+KII QA   L + S             + +Y N   
Sbjct: 269 IPVGSNGDTYDRFLVRNEEVWQSLKIIEQAYKNLPEGSYHADAPHYYLPPKQEVYTNMEA 328

Query: 291 ELHEFKPINCYTEAQRGEQYYS----------YGLDDEGLV-RQAKIRTPTATNLGAMED 339
            ++ FK +   T+A  GE Y+S          Y + D G    +   R P      A  +
Sbjct: 329 LIYHFKIVMGETDAPVGEVYHSVEGGNGELGFYLISDGGRTPYRLHFRRPCFIYYQAYTE 388

Query: 340 IVKGYHVSDAELIIAS 355
           ++KG  ++DA L ++S
Sbjct: 389 MIKGGQLADAILTLSS 404