Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

 Score = 63.2 bits (152), Expect = 1e-14
 Identities = 87/385 (22%), Positives = 137/385 (35%), Gaps = 53/385 (13%)

Query: 26  EDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGICSHIHLWSAARLVEIGCNI 85
           +D IV+          RG E+ + G   E A I   + CGIC   H  S+   +E  C I
Sbjct: 25  DDGIVEKGNYLSVTPVRGFEKFLVGKVAEFAPIAVSRFCGICPIAHATSSVEAIEDACGI 84

Query: 86  EIPERANHIRIIVEELERLHSHTLLFGHAFEI-------LGHETMSMRCFMLREPIMQVF 138
             P+    +R +     ++HSH L   H F I               R   +R+    + 
Sbjct: 85  TPPKDGLLLRELTGLGNKMHSHPL---HEFLIAPDFIPEADRVEYIKRIQEMRKTGQFIV 141

Query: 139 FEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKFLERMLNDPMIISRV 198
             I G  +H     +GG+    NI+E     I  K  +YE+   + +E ++  P+  S +
Sbjct: 142 DTIGGEAIHAPNIKVGGMLK--NITENAASKIYYKCREYEKLAKEHVEYLI--PIFESNM 197

Query: 199 KDVGVMDRKTAAKFHAVGPTAR----GSNVKSDMRKWGWVPEYDPYDFDE---------- 244
              G  +      +H  G  A     G+    D  K   V EY PYD  E          
Sbjct: 198 LADGT-EIPEKLGYHDFGYIATDATYGNRENIDQSK---VVEYTPYDVYEKDVAVQACTT 253

Query: 245 --------------------ILFDSGDVFARLAVRFYECLESVKIIRQALDALKDTSDKR 284
                                 F +    A    R YE +  VK   + +D L      R
Sbjct: 254 IPRYNGRLMEVGPRARFAKFHDFKNKGAMAIHIARAYENVVHVKRAMEIIDELDVNGKTR 313

Query: 285 IYNPNYELHEFKPINCYTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAMEDIVKGY 344
              P     E   +  + EA RG   +   +D +G +        T  N+  +    +G 
Sbjct: 314 SNEPILGDGEKIGLGVH-EAARGHNTHQAAIDAKGRITYYNAIVATTWNIPLIGKATEGT 372

Query: 345 HVSDAELIIASCDPCFTCTDRLMVL 369
           H   AE ++ + DPC +C   ++ +
Sbjct: 373 HYKFAEHVVRAYDPCVSCATHVIAM 397