Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 392 a.a., NADH-quinone oxidoreductase subunit D from Magnetospirillum magneticum AMB-1

 Score =  106 bits (265), Expect = 1e-27
 Identities = 109/391 (27%), Positives = 171/391 (43%), Gaps = 40/391 (10%)

Query: 6   IAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKI-- 63
           I  GP H       RL L +  E+V  A+  +G+ HRG E+L+E     +A    +++  
Sbjct: 11  INFGPQHPAAHGVLRLILEMSGEVVDRADPHVGLLHRGTEKLIEHKTYLQATPYFDRLDY 70

Query: 64  CGICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETM 123
            G  +  H +  A    +G  I+IP RA  IR + +E+ R+ +H L        +G  T 
Sbjct: 71  VGTMNQEHAFVLATEKLLG--IDIPIRAKFIRTLYDEIGRILNHLLNVTAFIFDVGGMTP 128

Query: 124 SMRCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPH-ILDKISKYEEGLN 182
            +  F  RE +M+ +  + G+R+H +    GG+          +P  +L+ I+ + E   
Sbjct: 129 LLYGFEEREKLMEFYERVCGARLHANYYRPGGVA-------ADLPAGLLEDIAAWCETFP 181

Query: 183 KFL---ERMLNDPMIIS-RVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYD 238
           K L   E +  D  I   RV D+GV+  + A  +   GP  R S +  D+RK      YD
Sbjct: 182 KVLDDIETLATDNRIFKQRVVDIGVVSPEQALDWGFTGPNLRASGIAWDLRKSQPYDVYD 241

Query: 239 PYDFDEILFDSGDVFARLAVRFYECLESVKIIRQALDALKD----TSDKRIYNPNYE--- 291
             +FD  +  +GD + R  VR  E  ESVKI++Q +  +        D +I  P      
Sbjct: 242 QMEFDIPVGKNGDGYDRYLVRVLEMRESVKIMKQCIAKMPGGPVRVEDNKITPPKRSEMK 301

Query: 292 ------LHEFK-----------PINCYTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNL 334
                 +H FK            +    EA +GE       D  G   + KIR P   +L
Sbjct: 302 TSMESLIHHFKLFTEGFKVPAGEVYGAIEAPKGEFAVYLVSDGTGKPYRCKIRPPGYVHL 361

Query: 335 GAMEDIVKGYHVSDAELIIASCDPCFTCTDR 365
            A++ + KG+ ++D    I S D  F   DR
Sbjct: 362 QALDMMSKGHMLADVVANIGSIDIVFGEIDR 392