Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 555 a.a., hydrogenase 4, subunit (NCBI) from Escherichia coli BW25113

 Score =  176 bits (447), Expect = 1e-48
 Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 22/365 (6%)

Query: 6   IAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEG-LPVEKACILCEKIC 64
           I +GP+H T  EP   RLF++ E + DA+  +   HRG+E+L E  +   +   L +++C
Sbjct: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243

Query: 65  GICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMS 124
           GIC   H  +    VE    IE+P+RA+ IR I+ E+ERLHSH L  G +   +G +T  
Sbjct: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303

Query: 125 MRCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKF 184
           M+ F +RE  M +   + GSR  Y   +IGG+R   +I + Q    L  + +    +++ 
Sbjct: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR--DILKEQRLQTLKLVREMRADVSEL 361

Query: 185 LERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDE 244
           +E +L  P +  R + +G++DR+ A       P A   N+   +                
Sbjct: 362 VEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTL---------------- 405

Query: 245 ILFDSGDVFARLAVRFYECLESVKIIRQALDALKDTSDKRIYNPNYELHEFKPINCYTEA 304
             F  GDVF+R+ VR  E  +S+ ++  ALD + DT        +Y+ H F     + EA
Sbjct: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT-PLLTEGFSYKPHAF--ALGFVEA 462

Query: 305 QRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAMEDIVKGYHVSDAELIIASCDPCFTCTD 364
            RGE  +   L D   + + + R  T  N   +  +++G  VSDA LII S DPC++CTD
Sbjct: 463 PRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522

Query: 365 RLMVL 369
           R+ ++
Sbjct: 523 RVTLV 527