Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 596 a.a., NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) from Escherichia coli BW25113

 Score = 84.3 bits (207), Expect = 8e-21
 Identities = 87/389 (22%), Positives = 162/389 (41%), Gaps = 39/389 (10%)

Query: 8   IGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGIC 67
           +GP H +     R+ L ++ E + D    IG +HRG E++ E           ++I  + 
Sbjct: 216 LGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLG 275

Query: 68  SHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRC 127
             ++       VE    I +P+R N IR+++ EL R++SH L      + +G  T     
Sbjct: 276 GCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFA 335

Query: 128 FMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISK-----YEEGLN 182
           F  R+ I  +   I+G R+H +   IGG+          +P   D++ +       + L 
Sbjct: 336 FTDRQKIYDLVEAITGFRMHPAWFRIGGV-------AHDLPRGWDRLLREFLDWMPKRLA 388

Query: 183 KFLERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDF 242
            + +  L + ++  R + V     K A ++   G   R + +  D+RK      Y+ +DF
Sbjct: 389 SYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDF 448

Query: 243 DEILFDSG--DVFARLAVRFYECLESVKIIRQALDALKD---TSDKRIYNPNYELHEFKP 297
            EI    G  D + R+ ++  E  +S++I+ Q L+ + +    +D  +  P  +    + 
Sbjct: 449 -EIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQH 507

Query: 298 INC---------------------YTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGA 336
           I                         EA +G   Y    D   +  + ++RTP+  +L  
Sbjct: 508 IETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQ 567

Query: 337 MEDIVKGYHVSDAELIIASCDPCFTCTDR 365
           +   ++G  VSD  + + S D   +  DR
Sbjct: 568 IPAAIRGSLVSDLIVYLGSIDFVMSDVDR 596