Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 599 a.a., NADH-quinone oxidoreductase subunit C/D from Erwinia tracheiphila SCR3

 Score = 89.7 bits (221), Expect = 2e-22
 Identities = 85/388 (21%), Positives = 161/388 (41%), Gaps = 37/388 (9%)

Query: 8   IGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGIC 67
           +GP H +     R+ L ++ E + D    +G +HRG E++ E           ++I  + 
Sbjct: 219 LGPNHPSAHGAFRIVLQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYIPYTDRIEYLG 278

Query: 68  SHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRC 127
             ++       VE    I++PER + IR+++ EL R++SH L      + +G  +     
Sbjct: 279 GCVNEMPYVLAVEKLAGIKVPERVDVIRVMLSELFRINSHLLYISTFIQDVGAMSPVFFA 338

Query: 128 FMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISK-----YEEGLN 182
           F  R+ I  V   I+G R+H +   IGG+          +P   D++ +       + L 
Sbjct: 339 FTDRQKIYDVVEAITGFRMHPAWFRIGGV-------AHDLPKGWDRLLREFLDWMPKRLK 391

Query: 183 KFLERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDF 242
            + +  L + ++I R K V       A  +   G   R + +  D+RKW     Y+ +DF
Sbjct: 392 AYEQTALKNSVLIGRAKGVSAYGMGEALAWGTTGAGLRATGLDFDVRKWRPYSGYENFDF 451

Query: 243 DEILFDS-GDVFARLAVRFYECLESVKIIRQALDALKD---TSDKRIYNPNYELHEFKPI 298
           +  + D     + R+ ++  E  +S++I+ Q L  + +    +D  +  P  +    + I
Sbjct: 452 EVPIGDGVSCAYTRVMLKMEEMRQSMRILEQCLKNMPEGPFKADHPLTTPPPKERTLQHI 511

Query: 299 NC---------------------YTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAM 337
                                    EA +G   Y    D   +  + ++RTP+  +L  +
Sbjct: 512 ETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFPHLQQI 571

Query: 338 EDIVKGYHVSDAELIIASCDPCFTCTDR 365
             ++ G  VSD  + + S D   +  DR
Sbjct: 572 PSVINGSLVSDLIVYLGSIDFVMSDVDR 599