Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 600 a.a., NADH-quinone oxidoreductase subunit C/D from Escherichia coli ECRC98

 Score = 83.6 bits (205), Expect = 1e-20
 Identities = 88/389 (22%), Positives = 161/389 (41%), Gaps = 39/389 (10%)

Query: 8   IGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGIC 67
           +GP H +     R+ L ++ E + D    IG +HRG E++ E           ++I  + 
Sbjct: 220 LGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLG 279

Query: 68  SHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRC 127
             ++       VE    I +P R N IR+++ EL R++SH L      + +G  T     
Sbjct: 280 GCVNEMPYVLAVEKLAGITVPARVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFA 339

Query: 128 FMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISK-----YEEGLN 182
           F  R+ I  +   I+G R+H +   IGG+          +P   D++ +       + L 
Sbjct: 340 FTDRQKIYDLVEAITGFRMHPAWFRIGGV-------AHDLPRGWDRLLREFLDWMPKRLA 392

Query: 183 KFLERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDF 242
            + +  L + ++  R + V     K A ++   G   R + +  D+RK      Y+ +DF
Sbjct: 393 SYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDF 452

Query: 243 DEILFDSG--DVFARLAVRFYECLESVKIIRQALDALKD---TSDKRIYNPNYELHEFKP 297
            EI    G  D + R+ ++  E  +S++I+ Q L+ + +    +D  +  P  +    + 
Sbjct: 453 -EIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQH 511

Query: 298 INC---------------------YTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGA 336
           I                         EA +G   Y    D   +  + +IRTP+  +L  
Sbjct: 512 IETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQ 571

Query: 337 MEDIVKGYHVSDAELIIASCDPCFTCTDR 365
           +   ++G  VSD  + + S D   +  DR
Sbjct: 572 IPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600