Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 396 a.a., NADH ubiquinone oxidoreductase chain D from Agrobacterium fabrum C58

 Score =  106 bits (265), Expect = 1e-27
 Identities = 104/392 (26%), Positives = 167/392 (42%), Gaps = 38/392 (9%)

Query: 6   IAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICG 65
           I  GP H +     RL L ++ EIV+  +  IG+ HRG E+L+E     +A    +++  
Sbjct: 11  INFGPEHPSAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDY 70

Query: 66  ICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSM 125
           +       + A  VE    +EIP R   IR++  E+ R+ SH +        +G  T  +
Sbjct: 71  VAPMNQEHAFALAVEKLLGLEIPMRGQLIRVLYSEIGRILSHIMNVTTQAMDVGAMTPPV 130

Query: 126 RCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKFL 185
             F  RE +M  +    G+R+H +    GG+       +   P ++D I K+ +     L
Sbjct: 131 WGFEEREKLMVFYERACGARMHSAYVRPGGVH------QDLPPELVDDIGKWCDPFLTVL 184

Query: 186 ---ERMLNDPMIIS-RVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYD 241
              E +L D  I   R  D+GV+  + A  +   G   RGS    D+R+      Y   +
Sbjct: 185 DNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFTGVMVRGSGAAWDLRRSQPYECYSDLE 244

Query: 242 FDEILFDSGDVFARLAVRFYECLESVKIIRQALDALK--------DTSDKRIYNPNYE-- 291
           FD  +  +GD + R  +R  E  ESVKI++Q +D L          + D ++  P     
Sbjct: 245 FDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVDRLSGKHRIGPVSSLDGKVVPPKRGEM 304

Query: 292 -------LHEFK-----------PINCYTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATN 333
                  +H FK            +    EA +GE       D      + KIR P   +
Sbjct: 305 KRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYVVADGSNKPYRCKIRAPGYAH 364

Query: 334 LGAMEDIVKGYHVSDAELIIASCDPCFTCTDR 365
           L AM+ + KG+ ++D   ++ S D  F   DR
Sbjct: 365 LQAMDFLCKGHQLADVTAVLGSLDIVFGEVDR 396