Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 867 a.a., ATP-dependent RNA helicase SrmB from Xanthobacter sp. DMC5

 Score =  232 bits (591), Expect = 8e-65
 Identities = 234/884 (26%), Positives = 390/884 (44%), Gaps = 126/884 (14%)

Query: 29  GRNTLICSPTGSGKTLSSFIAIINELFRIEKE---------------------------- 60
           G + L+ +PTG+GKTL+ F+  + EL R +K                             
Sbjct: 37  GHSVLLIAPTGAGKTLAGFLPTLIELSRPQKNARKPAAPPVAEAGDTATGEAAVPFARWQ 96

Query: 61  -EGLQNSIYCLYISPLKSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNY 119
            E   + ++ LYISPLK+LA DI  NL+ P+ E+             IR   R GDT   
Sbjct: 97  AERPASPLHTLYISPLKALAVDIARNLEAPVEEMG----------LPIRVETRTGDTPAS 146

Query: 120 EKSKMLKKTPHILNTTPETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISL 179
            + +  +  PHIL TTPE ++++L S   +     ++ V++DE+HAL  +KRG  LS++L
Sbjct: 147 RRQRQRRDPPHILLTTPEQISLLLASKDAEHLFSGLKRVVLDELHALVTSKRGDLLSLAL 206

Query: 180 ERLRELTNQEFLRIGCSATVEPLEMVADYLGGYYDDGYKRPV-EIVDTRFVRGYDLKLLC 238
            RLR +       +G SATV   + +  YL    +D  +  + ++V        D+ +L 
Sbjct: 207 ARLRAIA-PGLQCVGLSATVAEPDDLRRYLVPQDEDAAEPALADLVIAAGGAAPDISMLE 265

Query: 239 PVDDL--INKTPKEISEKLYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDE 296
               +   + T +    ++YE    LI  ++ +L+F NTR  AE +   L +     Y  
Sbjct: 266 SRARMPWASHTAQHAFAEIYE----LIGANKLSLVFVNTRWQAEFLFQELWRINDLNYP- 320

Query: 297 TNSGCHHGSLSKEKRLELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTM 356
                HHGSL+ E+R  +E  + +G LK    +SSL+LGID   +DLV+ +G+PK    +
Sbjct: 321 --IALHHGSLAVEQRRRVEAAMAAGKLKAVVATSSLDLGIDWGDVDLVINVGAPKGASRL 378

Query: 357 LQRIGRAGHGIGKVAKGRIIALDRDELLECAVMLKKAMDGFIDKVHIPKGPLDVLIQHIY 416
           +QRIGRA H + + ++  +I  +R E+LEC   L+    G  D     +G  DVL QHI 
Sbjct: 379 MQRIGRANHRLDEPSRAVLIPANRFEVLECRAALEAVKAGAQDTPPERQGAFDVLAQHIL 438

Query: 417 GIAINGYIELERVKNIVRRSYNYHDITDEDFKILINYMTASYAGMDEKRIYSKIWYDPDT 476
           G+A       + +   VR +  Y  ++  DF   ++++      +     Y+KI    D 
Sbjct: 439 GMACAAPFSADALYGEVRSAAPYRALSRADFDAALDFVATGGYALRAYERYAKIRRTKDG 498

Query: 477 QMIGKTGKTARAIYYMNIGTIPDDFSCDVYL---RGTT------------IWIGKLDEQY 521
                    A+A Y +N+GTI +     V L   RG                +G+++E +
Sbjct: 499 LWRVANPMIAQA-YRLNVGTIVEASMLKVRLVSARGAAKTGVAGRVRFGGRLLGEVEEYF 557

Query: 522 LDRLEKGDVFTLGGEHLKFQYRRGSKVYVDK-TSERPNIPSWYSERLPLSYDL--GRNIL 578
           ++ L  GD F   GE L+++     +VYV + T+  P +P++   + PLS  L  G   L
Sbjct: 558 VETLVPGDTFVFAGEILRYEVLVEDEVYVSRTTATEPKVPAYAGGKFPLSTFLAAGVRAL 617

Query: 579 LFKKEAVSKYNAGRLLDLLSEYPLDSNATKSLYGLFNEQILYKGNDSVSTLNKMVVEGHI 638
           L   E  +     ++ D L                     L K    +   + ++VE   
Sbjct: 618 LSAPERWAAL-PPQVRDWLE--------------------LQKAKSRLPGRDDLLVE--T 654

Query: 639 FDKKMHYYF----------HSNYGRKFNDGFSRAVAYAL---SKQYKLGVLVSISDTGFS 685
           F++   YY           H   G        RA    L   +  Y L V  +  D G +
Sbjct: 655 FERSGRYYLVTYPFEGRLAHQTLGMLLTRRLERARLKPLGFVANDYALAVYAA-GDMGAA 713

Query: 686 LEFAKNQKVDIESAIRSLTPENIKDVLKQALEGTNLLKRMFRINATRSLMILRNYIGHKK 745
           +   +    D+         + + D L+  L  + L+KR FR  A  + +I R + G +K
Sbjct: 714 ISDRRLSLDDL------FDQDMLGDDLEAWLAESALMKRTFRYCAVIAGLIERRFPGKEK 767

Query: 746 SAKKQQVSADILISYAKSLDRFAPLEETLREIIEDS----LELDNIREVLGEIRSGKLKI 801
           ++++  VS D++      L R  P    LR    D+    L++  + E+L  IR      
Sbjct: 768 TSRQVTVSTDLIYDV---LRRHEPDHLLLRAARADAATGLLDVKRLGEMLARIRG----- 819

Query: 802 NVIDVPIP--TPMSFGIATLTASDSVLAENKNQLLKEFHQMVIK 843
           +V+  P+P  +P++  +      +SV  +    LL E  + +++
Sbjct: 820 HVVHQPLPRVSPLAVPVLLEIGRESVGGDANEALLAEAEEELVR 863