Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score = 84.7 bits (208), Expect = 1e-20
 Identities = 90/352 (25%), Positives = 156/352 (44%), Gaps = 43/352 (12%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPL 75
           TP Q  AIP    GR+  + + TGSGKT +  + ++N L    K   ++ SI  L + P 
Sbjct: 24  TPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNRLIGPAK---VRVSIKTLILLPT 80

Query: 76  KSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTT 135
           + LA             +KE+  E  ++ T I+  I  G      ++ ML+K P IL  T
Sbjct: 81  RELAQQ----------TLKEV--ERFSQFTFIKSGIITGGEDFKVQAAMLRKVPDILIGT 128

Query: 136 PETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERL-RELTNQEFLRIG 194
           P  +   LN+      LK V+ +++DE    AD    +  +  ++RL  E  N++   + 
Sbjct: 129 PGRMIEQLNAGNL--DLKEVEVLVLDE----ADRMLDMGFADDVQRLVSECVNRQQTMLF 182

Query: 195 CSATVEPL--EMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEIS 252
            + T      EMVA  L           +++ +   +     + +   D  ++K  ++I 
Sbjct: 183 SATTGGSTLREMVAKVLNN------PEHLQVNNVSDLNATTRQQIVTADHNVHK--EQIL 234

Query: 253 EKLYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKRL 312
             L        +T++  ++FTNTR  A+R+   L  +      E  +   HG   ++ R 
Sbjct: 235 NWLLAN-----ETYQKAIVFTNTRAAADRIYGRLVAQ------EYKAFVLHGEKDQKDRK 283

Query: 313 ELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAG 364
              ++LK+G +K    +     G+D+  +DLV+    P+S    + RIGR G
Sbjct: 284 LAIDRLKAGGVKILVATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTG 335