Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 918 a.a., ATP-dependent, 3'-5' DNA helicase with strand annealing activity from Variovorax sp. SCN45

 Score =  244 bits (624), Expect = 1e-68
 Identities = 219/814 (26%), Positives = 384/814 (47%), Gaps = 78/814 (9%)

Query: 29  GRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNS---IYCLYISPLKSLANDIHVN 85
           GR+ L+ + TG+GKT + ++  + + F + ++E  + +   +  L+++P+++LA D    
Sbjct: 81  GRSGLLHATTGAGKTYAVWLGAL-QAFSLPRKETARPAPPPLTVLWLTPMRALAADTLRA 139

Query: 86  LDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTTPETLAIILNS 145
           L +PL  +       G E+       R GDTS+ E+S   ++ P +L TTPE+L+++L  
Sbjct: 140 LQQPLEAL-------GAEVHPWSTGARSGDTSSAERSAQNQRLPSVLVTTPESLSLLLAR 192

Query: 146 PKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIGCSATVEPLEMV 205
               E L +V+  ++DE H L  NKRGV + ++L RLR   N      G SAT+  L+  
Sbjct: 193 ADANEVLGSVRLAVVDEWHELLGNKRGVQVQLALARLRRW-NPGMTVWGMSATLGNLKEA 251

Query: 206 ADYLGGYYDDGYKR---PVEIVDTRFVRGYDLKLLCPVDDLINKTPKEISEKLYEKLDRL 262
              L G+ +    +   P ++V    + G   +        +   P+ I E         
Sbjct: 252 MHALLGHEEGVLVQGQVPKKLVIDSLLPGRAERFPWGGHLGLTMLPQVIEE--------- 302

Query: 263 IQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKRLELEEKLKSGN 322
           I   + TL+FTNTR  +E     L +  PE         HHGSL +E R  +E  LKSG 
Sbjct: 303 IAASKTTLVFTNTRSQSEIWYQALLEARPEWAGSI--ALHHGSLDREVREWVELGLKSGE 360

Query: 323 LKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGKVAKGRIIALDRDE 382
           LK    +SSL+LG+D   ++ V+QIGSPK V  +LQR GR+GH  G+ ++  ++     E
Sbjct: 361 LKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSGHAPGRPSRITLVPTHSIE 420

Query: 383 LLECAVMLKKAMDGFIDKVHIPKGPLDVLIQHIYGIAINGYIELERVKNIVRRSYNYHDI 442
           ++E A       +G I+  H P  PLDVL+QH+  +A+ G    + +   VR +  Y ++
Sbjct: 421 MVEGAAARAAIAEGHIEARHSPDQPLDVLVQHLVTVALGGGFLPDDLYAEVRGTAAYENL 480

Query: 443 TDEDFKILINYMTASYAGMDEKRIYSK-------IWYDPDTQMIGKTGKTARAIYYMNIG 495
           + E ++  +++++     +     Y +       +W  PD ++  +        + MNIG
Sbjct: 481 SRESWQWCLDFVSQGGPSLSAYPDYRRAVPDAEGVWRVPDARLARR--------HRMNIG 532

Query: 496 TIPDDFSCDVYLRGTTIWIGKLDEQYLDRLEKGDVFTLGGEHLKFQYRRGSKVYVDKTS- 554
           TI  D S  V   G    IG ++E ++ R++ GD F  GG  L+         +V + S 
Sbjct: 533 TIVSDASMSVQFVGGA-KIGSVEESFVARMKPGDCFLFGGRLLELVRIHDMTAWVRRASG 591

Query: 555 ERPNIPSWYSERLPLSYDLGRNILLFKKEAVSKYNAGRLLDLLSEYPLDSNATKSLYGLF 614
           +RP +P W   R+PLS  L   ++             R L L  +   DS   + +  L 
Sbjct: 592 KRPAVPRWNGGRMPLSNTLADAVV-------------RQLALAGDGAYDSPELQCVRPLL 638

Query: 615 NEQILYKGNDSVSTLNKMVVEGHIFDKKMHYYFHSNYGRKFNDGFSRAVAYALSKQYKLG 674
             Q  +    ++ T + ++ E     +  H + +   GR  + G +  +A+ +++     
Sbjct: 639 EIQQQW---SALPTPHTLLAETLATREGSHLFLYPFAGRHVHLGLASLLAWRVAQHEART 695

Query: 675 VLVSISDTGFSLEFAKNQKVDIESAIRSL--TPEN-----------IKDVLKQALEGTNL 721
             ++++D GF L  A   +VD  + +  +   PE            + +VL  +L    L
Sbjct: 696 FSIAVNDYGFELLSA--TEVDWPALLPQVLRLPEGNGEAGGADAALLHEVL-ASLNAGEL 752

Query: 722 LKRMFRINATRSLMILRNYIGHKKSAKKQQVSADILISYAKSLD-RFAPLEETLREIIED 780
            +R FR  A  S ++ + Y G K+S+++ Q S+ +     +  D     L++  +E++  
Sbjct: 753 AQRRFREIARVSGLVFQGYPGEKRSSRQLQASSSLFWEVFRKYDPDNRLLQQAEQELLAQ 812

Query: 781 SLELDNIREVLGEIRSGKLKINVIDVPIPTPMSF 814
            LE+  +R  L  +R    ++ +  +  PTP SF
Sbjct: 813 ELEIGRLRASL--VRMAGQQLVLKPLARPTPFSF 844