Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

 Score = 82.0 bits (201), Expect = 7e-20
 Identities = 89/355 (25%), Positives = 157/355 (44%), Gaps = 39/355 (10%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPL 75
           TP Q  AIP    GR+  + + TGSGKT +  + ++N L  +    G +  I  L + P 
Sbjct: 24  TPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLVDL---SGPRVEIRALILLPT 80

Query: 76  KSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTT 135
           + LA             +K++  +  ++ T I+  +  G     E++ ML+K P +L  T
Sbjct: 81  RELAQQ----------TLKQV--QLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPDVLIGT 128

Query: 136 PETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERL-RELTNQEFLRIG 194
           P  L   LN+      L  VQ +I+DE    AD    +  +  +ERL +E  N+E   + 
Sbjct: 129 PGRLLEQLNAGNL--DLSHVQVLILDE----ADRMLDMGFAEDMERLCKECENREQTLLF 182

Query: 195 CSATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEISEK 254
            + T      + D +G    D     +  V ++   G   +++    D   +  ++I++ 
Sbjct: 183 SATTGG--AALRDIIGKVLKDPEHLMLNSV-SQLAEGTRQQIITADHD---QHKEQIAQW 236

Query: 255 LYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKRLEL 314
           L        +T +  +IFTNTR  A+R+  +L  +      +  +   HG   ++ R   
Sbjct: 237 LLAN-----ETFDKAIIFTNTRAMADRIYGHLVAK------DVKAFVLHGEKDQKDRKLA 285

Query: 315 EEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGK 369
            E+ K G+ K    +     G+D+  +DLV+    P+S    + R+GR G   G+
Sbjct: 286 IERFKQGSSKVLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGE 340