Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

 Score =  372 bits (956), Expect = e-107
 Identities = 268/849 (31%), Positives = 424/849 (49%), Gaps = 49/849 (5%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFR--IEKEEGLQNSIYCLYIS 73
           T  Q  A P IH G++ L+ +PTGSGKTLS+F+A+++EL R  ++ +  L      +Y+S
Sbjct: 30  TDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELPAQTLVIYVS 89

Query: 74  PLKSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILN 133
           PLK+L+NDI +NL  PL  I + + E+G     I  A+R GDT   E++ M K  PHIL 
Sbjct: 90  PLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAPHILV 149

Query: 134 TTPETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRI 193
           TTPE+L +++ S   +E L  V  VI+DEIHALA NKRG HL+++LERL+ L  +   RI
Sbjct: 150 TTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCKKPLRRI 209

Query: 194 GCSATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEISE 253
           G SAT  P+E VA +L      G  RP  IVD    R  DL +  P   L      ++  
Sbjct: 210 GLSATQRPVERVAQFL-----VGSGRPCAIVDIGHARKRDLAIEVPPVPLGAVMAIDVWG 264

Query: 254 KLYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKRLE 313
            +Y++L  L + H  TL+F NTR  AER+  +L  R  ++        HHGSLSK  RL+
Sbjct: 265 LVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDRLGKE----AVAAHHGSLSKALRLD 320

Query: 314 LEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGKVAKG 373
            E++LKSG L+    ++SLELGID+  IDLV Q+ SP S+   LQR+GRAGH +  V KG
Sbjct: 321 AEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAGHQVDGVPKG 380

Query: 374 RIIALDRDELLECAVMLKKAMDGFIDKVHIPKGPLDVLIQHIYGIAINGYIELERVKNIV 433
           R+    RD+L+EC  +L     G +D +HIP+ PLDVL Q I   A N     + + + +
Sbjct: 381 RLFPTSRDDLIECVALLDCVRQGELDALHIPRAPLDVLAQQIVAEASNQAWHEQELLDCL 440

Query: 434 RRSYNYHDITDEDFKILINYMTASYAGMDEKRIYSKIWYDPDTQMIGKTGKTARAIYYMN 493
           R++  Y ++    ++ L+  +   Y G    R            + G+ G    A+   +
Sbjct: 441 RQATPYAELDQHHYQALLRMLAEGYNGRQGVRSAYLHRDAVSGTLRGRRGSQLTAL--TS 498

Query: 494 IGTIPDDFSCDVYLRGTTIWIGKLDEQYLDRLEKGDVFTLGGEHLKFQYRRGSKVYV-DK 552
            GTIPD+    V L    + IG ++E +      GD+F LG    +       +V V D 
Sbjct: 499 GGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQLGNASYRILRVEPGRVRVEDA 558

Query: 553 TSERPNIPSWYSERLPLSYDLGRNI--LLFKKEAVSKYNAGRLLDLL----SEYPLDSNA 606
               P IP W  E    S +L   +  L  + +       G  +++L    + + LD   
Sbjct: 559 HGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAGGDTVEVLAWLQATFELDEAC 618

Query: 607 TKSL--YGLFNEQILYKGNDSVSTLNKMVVEGHIFDKK--MHYYFHSNYGRKFNDGFSRA 662
              L  Y     ++L     ++ + + +V+E   FD+        HS YG + N  +  A
Sbjct: 619 AGQLLDYLARTREVL----GALPSQDTLVME-RFFDESGGTQLIIHSPYGSRINRAWGLA 673

Query: 663 VAYALSKQYKLGVLVSISDTGFSLEFAKNQKVDIESAIRSLTPENIKDVLKQALEGTNLL 722
           +     + +   +  + S+    L  + +   +++   R L   + + +L QAL    L 
Sbjct: 674 LRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRSAEPILIQALLDAPLF 733

Query: 723 KRMFRINATRSLMILRNYIGHKKSAKKQQVSADILISYAKSLDRFAPL------------ 770
              +R NA  ++ + R   G K + + Q++ ++ L++ A   D+ A L            
Sbjct: 734 GVRWRWNAGVAMALPRFVGGRKVAPQIQRMKSEDLVA-AVFPDQIACLENIAGERQIPDH 792

Query: 771 ---EETLREIIEDSLELDNIREVLGEIRSGKLKINVIDVPIPTPMSFGIATLT----ASD 823
              E+TL + + ++++ +    +L  + SG +++   D+P P+P++  I          D
Sbjct: 793 PLVEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLASAILNARPYAFLDD 852

Query: 824 SVLAENKNQ 832
           + L E + Q
Sbjct: 853 APLEERRTQ 861