Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 1437 a.a., ATP-dependent RNA helicase SrmB from Pseudomonas sp. RS175

 Score =  365 bits (938), Expect = e-105
 Identities = 267/846 (31%), Positives = 421/846 (49%), Gaps = 44/846 (5%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEG-LQNSIYCLYISP 74
           T  Q  A P I   R+TL+ +PTGSGKTL++F+A+++EL     E+G L +    +Y+SP
Sbjct: 30  TAAQARAWPLIGQRRSTLVAAPTGSGKTLTAFLAVLDELVHRGLEQGGLLDQTLVVYVSP 89

Query: 75  LKSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNT 134
           LK+L+NDI +NL  PL  I E L+        I  A+R GDT   E+S M K  PHIL T
Sbjct: 90  LKALSNDIRINLQNPLAGITEQLRRMDLPPLHITTAVRTGDTPQKERSAMRKTAPHILVT 149

Query: 135 TPETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIG 194
           TPE+L ++L S   ++ L + + VI+DEIHA+A +KRG HL++SLERL+ L  +  +RIG
Sbjct: 150 TPESLYVLLGSDSGRQMLASTRTVIVDEIHAIAASKRGSHLALSLERLQALCAEPLVRIG 209

Query: 195 CSATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEISEK 254
            SAT +P+E V+ +L      G  RP EIVD    R  DL +  P   L      ++ E 
Sbjct: 210 LSATQKPIEAVSRFL-----VGAGRPCEIVDIGHARPRDLGIEVPPVPLSAVMANDVWEL 264

Query: 255 LYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKRLEL 314
           +Y +L  L + H  TL+F NTR  AER    L +   E+  +     HHGSL+KE RL+ 
Sbjct: 265 VYNRLADLAREHRTTLVFVNTRRLAER----LSRHLSERLGKDAVAAHHGSLAKEFRLDA 320

Query: 315 EEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGKVAKGR 374
           E++LK G L+    ++SLELGID+  +DLV QI SP+S+   LQR+GR+GH +G   KGR
Sbjct: 321 EQRLKRGELQVLIATASLELGIDIGDVDLVCQIASPRSISAFLQRVGRSGHQVGGTPKGR 380

Query: 375 IIALDRDELLECAVMLKKAMDGFIDKVHIPKGPLDVLIQHIYGIAINGYIELERVKNIVR 434
           + A  RD+L+ECA +L     G +D +HIP  PLDVL Q I         + + +    R
Sbjct: 381 LFATTRDDLIECAALLDCVRRGELDILHIPTAPLDVLAQQIVAEVSCQEWQEQALLETFR 440

Query: 435 RSYNYHDITDEDFKILINYMTASYAGMDEKRIYSKIWYDPDTQMIGKTGKTARAIYYMNI 494
           R+  Y  + +  ++ L+  +     G    R            + G+ G    A+   + 
Sbjct: 441 RASPYAALDEGHYQALLQMLAEGVNGRQGVRSAYLHRDAVSRTLRGRRGSKLTAV--TSG 498

Query: 495 GTIPDDFSCDVYLRGTTIWIGKLDEQYLDRLEKGDVFTLGGEHLKFQYRRGSKVYV-DKT 553
           GTIPD+    V L    + IG ++E +      GDVF LG    +       +V V D  
Sbjct: 499 GTIPDNADYSVLLESQGLNIGSVNEDFAVESIAGDVFQLGNTSYRIIRVETGRVRVEDAQ 558

Query: 554 SERPNIPSWYSERLPLSYDLGRNILLFKKE-----AVSKYNAGRLLD-LLSEYPLDSNAT 607
            + P IP W  E    S +L   +   + +       +  N    LD L     L+  + 
Sbjct: 559 GQPPTIPFWLGEAPGRSAELSMAVARLQAQLDRLLGATPGNLQPALDWLTGTLQLNQASA 618

Query: 608 KSLYGLFNEQILYKGNDSVSTLNKMVVEGHIFDKK--MHYYFHSNYGRKFNDGFSRAVAY 665
           + L        L  G  ++ + + +++E   FD+        HS +G + N  +  A+  
Sbjct: 619 EQLVDYLAPARLAFG--ALPSQDTLLME-RFFDESGGTQLIIHSPFGSRINRAWGLALRK 675

Query: 666 ALSKQYKLGVLVSISDTGFSLEFAKNQKVDIESAIRSLTPENIKDVLKQALEGTNLLKRM 725
              + +   +  + S+    L  + +   +++   R L  ++ + VL QA+    L    
Sbjct: 676 RFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSQSAEQVLVQAVLDAPLFGVR 735

Query: 726 FRINATRSLMILRNYIGHKKSA------KKQQVSADILISYAKSLDRFA--------PL- 770
           +R NA  +L + R Y G +K A      K + + A +       L+  A        PL 
Sbjct: 736 WRWNAGVALALPR-YTGGRKVAPQIQRMKSEDLIASVFPDQIACLENLAGEREIPDHPLV 794

Query: 771 EETLREIIEDSLELDNIREVLGEIRSGKLKINVIDVPIPTPMSFGIATLT----ASDSVL 826
           E+TL + + ++++ +    +L  + +G++++   D+P P+P++  I +        D+ L
Sbjct: 795 EQTLDDCLHEAMDSEGWLTLLRRMEAGEIRLISRDLPAPSPLAAEILSARPYTFLDDAPL 854

Query: 827 AENKNQ 832
            E + Q
Sbjct: 855 EERRTQ 860