Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

 Score = 64.3 bits (155), Expect = 1e-14
 Identities = 85/394 (21%), Positives = 155/394 (39%), Gaps = 49/394 (12%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPL 75
           TP Q+ AIP +  GR+ +  + TG+GKT    + ++  L   +     +  +  L ++P 
Sbjct: 25  TPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPT 84

Query: 76  KSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTT 135
           + LA  I  N+             + ++   IR  +  G  S   +   L+    +L  T
Sbjct: 85  RELAAQIGENV------------RDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVAT 132

Query: 136 PETLAIILNSPKFKEKLKTVQWVIIDEIHALAD-----NKRGVHLSISLERLRELTNQEF 190
           P  L  + +    K  L  V+ +++DE   + D     + R V   +  +R   L +  F
Sbjct: 133 PGRLLDLEHQNAVK--LDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATF 190

Query: 191 LRIGCSATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKE 250
                    + ++ +A+ L          P+EI   R     D ++   V  +  K  +E
Sbjct: 191 S--------DDIKALAEKL-------LHNPLEIEVARRNTASD-QVTQHVHFVDKKRKRE 234

Query: 251 ISEKLYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEK 310
           +   +  K        +  L+FT T+ GA  +   L K      D   S   HG+ S+  
Sbjct: 235 LLSHMIGK-----GNWQQVLVFTRTKHGANHLAEQLNK------DGIRSAAIHGNKSQGA 283

Query: 311 RLELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGKV 370
           R       KSG+++    +     G+D+  +  VV    P   +  + RIGR G      
Sbjct: 284 RTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATG 343

Query: 371 AKGRIIALDRDELLECAVMLKKAMDGFIDKVHIP 404
               ++ +D  +LL     ++K +   I ++ IP
Sbjct: 344 EALSLVCVDEHKLLR---DIEKLLKKEIPRIAIP 374